Locus 10031

Sequence ID 3R_DroMel_CAF1
Location 26,850,676 – 26,850,774
Length 98
Max. P 0.984706
window15980

overview

Window 0

Location 26,850,676 – 26,850,774
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 95.85
Mean single sequence MFE -24.42
Consensus MFE -21.56
Energy contribution -21.32
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.88
SVM decision value 1.98
SVM RNA-class probability 0.984706
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26850676 98 - 27905053
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAU--AUUUCAGCUCAAAAAGUUCAGCGCGAAGCGAAGGAAGAAGCAAAAUGGGAUUUA
...................((.(((((((..((((((..((...--.((((.(((.((....)).)))..))))))..))))))..))))))).)).... ( -21.80)
>DroSec_CAF1 58823 98 - 1
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAU--AUUUCAGCUCAAAAAGUUCAGCGCGAAGCGAAGGAAGAAGCAAAAUGGGAUUUA
...................((.(((((((..((((((..((...--.((((.(((.((....)).)))..))))))..))))))..))))))).)).... ( -21.80)
>DroSim_CAF1 59851 98 - 1
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAU--AUUUCAGCUCAAAAAGUUCAGCGCCAAGCGAAGGAAGAAGCAAAAUGGGAUUUA
...................((.(((((((..((((((..(((((--.(((.......))).)))).((.....)))..))))))..))))))).)).... ( -21.20)
>DroEre_CAF1 64383 98 - 1
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAU--AUUUCAGCGCAAAAAGUUCAGCGCGAAGCGAAGGAAAAGGCAAAAUGGGAUUUA
...................((.(((((((((((((((..((...--.((((.((((..........))))))))))..))))))))))))))).)).... ( -30.60)
>DroYak_CAF1 70922 100 - 1
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAUAUAUUUCAGCUCAAAAAGUUGGGCGCAAAGCGAAGGAAAAAGCAAAAUGGGAUUCA
...................((.(((((((..((((((.(((((.....))).((((((....)))))).....))...))))))..))))))).)).... ( -26.70)
>consensus
AAAUUGUAACUUAAGGCAUUUGCAUUUUGUCUUUUCCGGCGAAU__AUUUCAGCUCAAAAAGUUCAGCGCGAAGCGAAGGAAGAAGCAAAAUGGGAUUUA
...................((.((((((((.((((((((((((.....))).)).)..........((.....))...)))))).)))))))).)).... (-21.56 = -21.32 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:21 2006