Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,192,413 – 3,192,533 |
Length | 120 |
Max. P | 0.859067 |
Location | 3,192,413 – 3,192,533 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -44.70 |
Consensus MFE | -44.31 |
Energy contribution | -44.53 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.99 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3192413 120 - 27905053 AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGUCAGCCAAGCGGGAACUUGAUAAGGACAAAAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC ..((.(((((.(((.((((((.(((((((.....))).))))(..((.....))..).)))))).))).)))))....(((..((((((.....)))))).))).....))......... ( -38.30) >DroSec_CAF1 11922 120 - 1 AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC .....(((((.(((.((((((.(((((((.....))).))))((((((...)))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) ( -47.90) >DroSim_CAF1 18649 120 - 1 AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC .....(((((.(((.((((((.(((((((.....))).))))((((((...)))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) ( -47.90) >consensus AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC .....(((((.(((.((((((.(((((((.....))).))))(((((.....))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) (-44.31 = -44.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:05 2006