Locus 10029

Sequence ID 3R_DroMel_CAF1
Location 26,835,642 – 26,835,753
Length 111
Max. P 0.826675
window15977

overview

Window 7

Location 26,835,642 – 26,835,753
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 93.69
Mean single sequence MFE -28.48
Consensus MFE -24.16
Energy contribution -23.96
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.70
SVM RNA-class probability 0.826675
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26835642 111 - 27905053
UUAAUGGCUUCGUGAUUUGUUUGGCCUUAAGCGCAAAAUUUCCCUGUGUGCUUUUAAUGCUGGUACCCAUAGAUUGCUAAAUGUAAUUCUGACCACAAACACUGAAGGCAA
....((.(((((((.(((((..(((...(((((((...........))))))).....)))(((.....((((((((.....)))).))))))))))))))).)))).)). ( -27.40)
>DroSec_CAF1 43988 111 - 1
UUAAUGUCUUCGUGAUUUGUUUGGCCUUAAGCGCAAAAUUUCCCUGUGUGCUUUUAAUGCUGGUACCCACAGAUUGCUGCAUGUAAUUCUGACCACAAACACUGAAGGCAA
....((((((((((.((((((..((...(((((((...........))))))).....))..)......((((((((.....)))).))))...)))))))).))))))). ( -31.10)
>DroSim_CAF1 44953 111 - 1
UUAAUGGCUUCGUGAUUUGUUUGGCCUUAAGCGCAAAAUUUCCCUGUGUGCUUUUAAUGCUGGUACCCACAGAUUGCUGAAUGUAAUUCUGACCACAAACACUGAAGGCAA
....((.(((((((.((((((..((...(((((((...........))))))).....))..)......((((((((.....)))).))))...)))))))).)))).)). ( -29.20)
>DroEre_CAF1 48796 111 - 1
UUAAUGGUUUCGUGAUUUGUUUGGCCUUAAGCGCAAUAUUUCCUUGUGUGCUUUUAAUGCUGGUACCCAUAGAUUGCUGCUUGUAAUUCUGACCACAAGCACUGAAGGCAA
....((.(((((..(((((((..((...(((((((.((......))))))))).....))..).....))))))..)(((((((..........)))))))..)))).)). ( -27.50)
>DroYak_CAF1 55286 111 - 1
UUAAUGGUUUCGUGAUUUGUUUGGCCUUAGCCGCUAAAUUUGCUUGUGUGCUUUUAAUGCUGGUACCCAUAGAUUGCUGCUUCUAAUGCUGACCACAAACACUGAAGGCAA
....((.(((((((.((((((..((.((((..((..((((((..((.(((((.........))))).))))))))...))..)))).))..)..)))))))).)))).)). ( -27.20)
>consensus
UUAAUGGCUUCGUGAUUUGUUUGGCCUUAAGCGCAAAAUUUCCCUGUGUGCUUUUAAUGCUGGUACCCAUAGAUUGCUGCAUGUAAUUCUGACCACAAACACUGAAGGCAA
....((.(((((((.(((((..(((...(((((((...........))))))).....)))(((.....((((((((.....))))).)))))))))))))).)))).)). (-24.16 = -23.96 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:19 2006