Locus 10028

Sequence ID 3R_DroMel_CAF1
Location 26,830,408 – 26,830,507
Length 99
Max. P 0.591848
window15976

overview

Window 6

Location 26,830,408 – 26,830,507
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.40
Mean single sequence MFE -23.88
Consensus MFE -14.31
Energy contribution -14.32
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.53
Structure conservation index 0.60
SVM decision value 0.12
SVM RNA-class probability 0.591848
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26830408 99 + 27905053
ACUUCAACAGC-GAGCUCUUCAGACACGCAUAUGCA-AGGACUUAGUUU-UAACCCGGGGCUAUCAAAUCUUGUAGCUGACAUUUAUGCGAGUCUGAGUUCU
...........-((((((...((((.((((((((((-(((...((((((-(.....))))))).....))))))).........)))))).)))))))))). ( -26.80)
>DroPse_CAF1 73128 85 + 1
----------------ACUUCAGACACGCAUAUGCA-GAGACUUAGUUUUUGGCCCGGGGUUAUCCAAUCUUGAAGCUGACAUUUAUGCGAGUCUAAGUUCU
----------------((((.((((.((((((..((-(((((...)))))))((.(((((((....)))))))..)).......)))))).))))))))... ( -23.30)
>DroSim_CAF1 39731 99 + 1
ACUUCAACAGC-CAGCUCUUCAGACACGCAUAUGCA-AGGACUUAGUUU-UAACCCGGGGCUAUCAAAUCUUGUAGCUGACAUUUAUGCGAGUCUGAGUUCU
...........-......(((((((.((((((((((-(((...((((((-(.....))))))).....))))))).........)))))).))))))).... ( -24.30)
>DroMoj_CAF1 51487 85 + 1
-------------AG---CUUUGACACGCAUACGCUUAGUGCUUAGUCU-UAACCCGAGGCUAUCAAAUCUUGUAGCUGACAUUUAUGUGUGUCUUACUACU
-------------..---....((((((((((...(((((((.((((((-(.....))))))).........))).))))....))))))))))........ ( -21.40)
>DroAna_CAF1 44118 100 + 1
CCUCCAACGACCAAGCUCUUCAGACACGCAUAUGCA-GGGACUUAGUUU-UAACCCGGGGCUAUGAAAUCUUGUAGCUGACAUUUAUGCGAGUCUAAGUUCU
.............((..(((.((((.((((((....-(((.........-...)))..(((((..(....)..)))))......)))))).)))))))..)) ( -24.20)
>DroPer_CAF1 73495 85 + 1
----------------ACUUCAGACACGCAUAUGCA-GAGACUUAGUUUUUGGCCCGGGGUUAUCCAAUCUUGAAGCUGACAUUUAUGCGAGUCUAAGUUCU
----------------((((.((((.((((((..((-(((((...)))))))((.(((((((....)))))))..)).......)))))).))))))))... ( -23.30)
>consensus
_____________AG_UCUUCAGACACGCAUAUGCA_AGGACUUAGUUU_UAACCCGGGGCUAUCAAAUCUUGUAGCUGACAUUUAUGCGAGUCUAAGUUCU
.....................((((.((((((.........((..(........)..))(((((........))))).......)))))).))))....... (-14.31 = -14.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:18 2006