| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,821,121 – 26,821,212 |
| Length | 91 |
| Max. P | 0.537845 |
| Location | 26,821,121 – 26,821,212 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26821121 91 - 27905053 AGGGGGCUGUUUUUCACU---------UACAGUCUG-----CAAAACG----AUAGUUCUGGGCCAACUGUCUCUCGUGAUAUGGCCCAAUUUACCA-GCCACCUAAUUG .((((((((.........---------.((.(((..-----......)----)).))..(((((((..((((......)))))))))))......))-))).)))..... ( -28.60) >DroSec_CAF1 29809 91 - 1 AGGGGGCUGUUUUUCACC---------UACAGUCUG-----CAAAACG----AUAGUUCUGGGCCAACUGUCUCUCGUGAUAUGGCCCAAUUUACCC-GCCACCUAAUUA .(((((((((........---------.))))))..-----.......----.......(((((((..((((......))))))))))).....)))-............ ( -27.20) >DroSim_CAF1 30058 91 - 1 AGGGGGCUGUUUUUCACC---------CACAGUCUG-----CAAAACG----AUAGUUCUGGGCCAACUGUCUCUCGUGAUAUGGCCCAAUUUACCC-GCCACCUAAUUG .(((((((((........---------.))))))..-----.......----.......(((((((..((((......))))))))))).....)))-............ ( -26.50) >DroEre_CAF1 34183 90 - 1 -GGGGGCUGUUUUUCACU---------UACAGUCUG-----CCAAACG----AUAGUUCUGGGCCAACUGUCUCUCGUGAUCUGGCCCAAUUUAGCC-GCCACCUAAUUG -((.(((((.........---------.((.(((..-----......)----)).))..(((((((...(((......))).)))))))...)))))-.))......... ( -26.90) >DroYak_CAF1 40142 100 - 1 AGGGGGCUGUUUUUCACUAGU-ACU--CGUAGUCUG-----CCAAAGUUGGCCUAGAACU-AGCCAACUGUCUCUCGUGAUUCGGCCCAAUUUAGCC-GCCAUCUAAUUG .((.(((((......((((..-...--..))))..(-----((..(((((((.((....)-))))))))(((......)))..)))......)))))-.))......... ( -27.00) >DroAna_CAF1 33662 102 - 1 -GGGGGGUGUCUUUUAGGAGGCAUGGGUAGGGGCGGCUUUAAAUGAUG----AUAGUCCUGGG---ACAGUGUCUCGUGAUCCGGUCUAAUUUAGCUCUGUUCCUAAUUG -.....(((((((....)))))))...(((((((((..((((((...(----((.(((.((((---((...)))))).)))...)))..))))))..))))))))).... ( -31.10) >consensus AGGGGGCUGUUUUUCACU_________UACAGUCUG_____CAAAACG____AUAGUUCUGGGCCAACUGUCUCUCGUGAUAUGGCCCAAUUUACCC_GCCACCUAAUUG .((((((.....................................(((........))).(((((((...(((......))).))))))).........))).)))..... (-14.25 = -14.95 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:16 2006