Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,818,394 – 26,818,497 |
Length | 103 |
Max. P | 0.595236 |
Location | 26,818,394 – 26,818,497 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 71.22 |
Mean single sequence MFE | -19.51 |
Consensus MFE | -3.09 |
Energy contribution | -5.65 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.64 |
Structure conservation index | 0.16 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26818394 103 + 27905053 GUCUCCAGUUCUUAUAUUUUGA--AUAAGUGUGCCACUUUAGAUAUUGCAUUUAUGUUAUAAAAAAAAGAUAUUUACAUAAUGUC--UAUCCUCGAGUGCCACAUUA .......((((.........))--)).((((((.(((((.((.(((.(((....))).)))......(((((((.....))))))--)...)).))))).)))))). ( -19.40) >DroSec_CAF1 27062 101 + 1 GUCUCCAAUUCUUAUAUCUUGA--UUAAGUGUGCCACUUUAGAUAUUGCAUUUAUGUUAUAAA--AAAGAUAUUUACACAAUGUC--UAUCCUCGAGUGCCACAUUA ......................--...((((((.((((((((((((((.....(((((.....--...))))).....)))))))--)).....))))).)))))). ( -20.70) >DroSim_CAF1 27349 101 + 1 GUCUCCAAUUCUUAUAUUUAGA--UUAAGUGUGCCACUUUAGAUAUUGCAUUUAUGUUAUAAA--AAAGAUAUUUACACAAUGUC--UAUCCUCGAGUGCCACAUUA ......................--...((((((.((((((((((((((.....(((((.....--...))))).....)))))))--)).....))))).)))))). ( -20.70) >DroEre_CAF1 31475 88 + 1 AGCUGCG-CUGUUAUAUUUUGA--UUAGGCGACCCACUUUAGAUAUUGCCCUUCU----------------ACUUACAUAAGGUCGCUAUUCUCAAGAGCCGGAUAA ..(((.(-((.......(((((--...(((((((.....((((.........)))----------------).........)))))))....))))))))))).... ( -16.85) >DroYak_CAF1 37388 97 + 1 AGCUGAA-CUGUG-GAUUCAGAUAUUAGAUG------UAUAUAUAUUGCACUUUUGUUAUAUA--AAAGAUAGCUACAUAAGGUCUCCAUUCUGAAAUGCCACAUGA .......-.((((-(.((((((....(((((------((.......))).(((.(((..(((.--....)))...))).)))))))....))))))...)))))... ( -19.90) >consensus GUCUCCA_UUCUUAUAUUUUGA__UUAAGUGUGCCACUUUAGAUAUUGCAUUUAUGUUAUAAA__AAAGAUAUUUACAUAAUGUC__UAUCCUCGAGUGCCACAUUA ............................(((((.(((((..((((..(((((...........................)))))...))))...))))).))))).. ( -3.09 = -5.65 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:15 2006