Locus 10022

Sequence ID 3R_DroMel_CAF1
Location 26,813,566 – 26,813,666
Length 100
Max. P 0.647087
window15969

overview

Window 9

Location 26,813,566 – 26,813,666
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -20.80
Consensus MFE -13.05
Energy contribution -16.18
Covariance contribution 3.12
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.24
SVM RNA-class probability 0.647087
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26813566 100 + 27905053
AGCAAAAUAACGAUAUCGUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAUUGUACUAAAUAAGU
.((((.....(((((.((((.((......))...((((..(((((((.......)))))))..))))...).))).)))))....))))........... ( -25.40)
>DroSec_CAF1 22229 100 + 1
AGCAAAAUAACGAUAUCGUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAAUGUAAUAAAUAAGU
.....(((((((.........((......))...((((..(((((((.......)))))))..))))......))))))).................... ( -24.70)
>DroSim_CAF1 22480 100 + 1
AGCAAGAUAACGAUAUCGUCAGCAAUUCAGCAUAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGGAAUGUAAUAAAUAAGU
.....(((((((.........((......))...((((..(((((((.......)))))))..))))......))))))).................... ( -25.10)
>DroEre_CAF1 26613 75 + 1
GGGCAAAUAAUGAAAUCGCCAGCAA-------------------------UUUUGGGAGCCUUGACAACAGAACGUUAUUGAGAAAUGUAAUAAAUAAGA
..(((..........((.((((...-------------------------..))))))..((..(.(((.....))).)..))...)))........... (  -8.00)
>consensus
AGCAAAAUAACGAUAUCGUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAAUGUAAUAAAUAAGU
.....(((((((.........((......))...((((.((((((((.......)))))))).))))......))))))).................... (-13.05 = -16.18 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:11 2006