Locus 10021

Sequence ID 3R_DroMel_CAF1
Location 26,813,219 – 26,813,337
Length 118
Max. P 0.896294
window15968

overview

Window 8

Location 26,813,219 – 26,813,337
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -41.32
Consensus MFE -30.16
Energy contribution -31.64
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -2.73
Structure conservation index 0.73
SVM decision value 0.99
SVM RNA-class probability 0.896294
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26813219 118 - 27905053
CUUGUUUCUUUUUUCCGCUUUUCCCGCCCAAAGAAAGCACUGCGGGUGGAAACGCA-G-AGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGAGUCAGACGUGUUUU
...........((((((((((((((((.........)).(((((........))))-)-.)))))))))).))))...((((((....((.((((......)))).))....)))))).. ( -36.00)
>DroSec_CAF1 21906 117 - 1
AUUGUUUCUUUU-CACGCUUUUCCCGCCCAAAGAAAGCACUGCGGGGGGAAACGCA-G-GGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGACUCAGCCGUGUUUU
.........(((-((((((((((((((.........)).(((((........))))-)-.)))))))))))))))...((((((((.....((((......)))).....)))))))).. ( -45.10)
>DroSim_CAF1 22156 117 - 1
GUUGUUUCUUUU-CACGCUUUUCCCGCCCAAAGAAAGCACUGCGGGUGGAAACGCA-G-GGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGAGUCAGCCGUGUUUU
.........(((-((((((((((((((.........)).(((((........))))-)-.)))))))))))))))...((((((((..((.((((......)))).))..)))))))).. ( -47.80)
>DroEre_CAF1 26274 116 - 1
AUUGUGCCUUUU-CACGCUUUUCCCGCCCAAAGAAAGCACUGCGGGUGGAAAAGGA---GGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGAAUCAGCCAUGUUUU
.........(((-((((((((((((((((..((......))..)))).........---.)))))))))))))))...((((((((.....((((......)))).....)))))))).. ( -40.00)
>DroYak_CAF1 32140 115 - 1
AUUGUGCCUUUU-CACGCUUUUCC----CAAAGAAAGCACUGCGGGUGGAAAAGGGAGCGGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGAAUCAGCCGUGUUUU
.........(((-(((((((((((----(........(((.....))).....(....).)))))))))))))))...((((((((.....((((......)))).....)))))))).. ( -37.70)
>consensus
AUUGUUUCUUUU_CACGCUUUUCCCGCCCAAAGAAAGCACUGCGGGUGGAAACGCA_G_GGGGGAAAGUGUGAAAUUCGAUAUGGCAAACACGCAUUCAACUGCGAAUCAGCCGUGUUUU
.............((((((((((((((((..((......))..))))(....).......))))))))))))......((((((((.....((((......)))).....)))))))).. (-30.16 = -31.64 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:10 2006