Locus 10020

Sequence ID 3R_DroMel_CAF1
Location 26,813,037 – 26,813,143
Length 106
Max. P 0.904286
window15967

overview

Window 7

Location 26,813,037 – 26,813,143
Length 106
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 72.71
Mean single sequence MFE -20.21
Consensus MFE -8.80
Energy contribution -11.12
Covariance contribution 2.32
Combinations/Pair 1.28
Mean z-score -1.99
Structure conservation index 0.44
SVM decision value 1.03
SVM RNA-class probability 0.904286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26813037 106 + 27905053
UCCUUCCUUUAU--------AAACACCAAAAUGGAAGCUUAACUAUUUAAGCAAAUCUUGUUAGUUAUCUA-UUAGU--AGAGCAUAUGGUAAAUUCUCUUAUGCAUAAAACUGAAA
...((((.....--------............))))((((((....))))))........((((((.((((-....)--)))(((((.((......))..)))))....)))))).. ( -17.53)
>DroSec_CAF1 21733 105 + 1
UC-UAUCUUUAU--------AAACACCAAAGUCG-UGAUUAACUAUUUAAGCUAAUUUUGUUAGUUCUCUAAUUAGU--AUGGCAUAAAGUAAAUUCCCUUAUGCAUAAAACUGAAA
..-........(--------((.(((.......)-)).)))((((.((((((((((...)))))))...))).))))--...((((((.(.......).))))))............ ( -11.00)
>DroSim_CAF1 21982 106 + 1
UCCUUUCUUUAU--------AAACACCAAAAUCU-GGAUUAACUAUUUAGGCAAAUUUUGUUAGUUCUCUAAUUAGU--AUGGCAUAAGGUAAAUUCCCUUAUGCAUAAAACUGAAA
............--------..............-((((((((.((((....))))...)))))))).....(((((--.(.((((((((.......))))))))...).))))).. ( -19.60)
>DroEre_CAF1 26106 96 + 1
UCCUGCUUAUAC--------CAACACCAAAAUGG-AGCUUAACUUUUUAGGCAAAUUUUGUUAGUCUUGUA-UGAGU--ACGACAUUAGGUAAAUUGCCUU---------ACUUAAA
((.(((((((((--------..((..((((((..-.((((((....))))))..))))))...))...)))-)))))--).))..((((((((......))---------)))))). ( -22.60)
>DroYak_CAF1 31964 104 + 1
UCAUGCAUAUAUGUACAUGGAAACACCAAAAUGG-GGCUUAACUUUUUAAGCAAAUUUUGUUAGUUUUCCA-UGUGCAGACAACAUGAAGUAAAUU--CCU---------GAUCAAA
(((((......(((((((((((((..((((((..-.((((((....))))))..))))))...).))))))-)))))).....)))))........--...---------....... ( -30.30)
>consensus
UCCUGCCUUUAU________AAACACCAAAAUGG_AGCUUAACUAUUUAAGCAAAUUUUGUUAGUUCUCUA_UUAGU__ACGGCAUAAGGUAAAUUCCCUUAUGCAUAAAACUGAAA
..........................((((((....((((((....))))))..))))))............(((((.....((((((((.......)))))))).....))))).. ( -8.80 = -11.12 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:09 2006