Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,191,807 – 3,191,927 |
Length | 120 |
Max. P | 0.724429 |
Location | 3,191,807 – 3,191,927 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -37.72 |
Energy contribution | -38.16 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.29 |
Structure conservation index | 0.93 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3191807 120 - 27905053 UCCGACAGGUUUCCGGGUCAACUGGUUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......(((..((((.....)))).......((..(((((((....)).....((((.((.....))))))...)))))......(((....))).....)).(((......)))))). ( -38.80) >DroSec_CAF1 11345 120 - 1 UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). ( -41.20) >DroSim_CAF1 18035 120 - 1 UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). ( -41.20) >DroEre_CAF1 13103 120 - 1 UCCGACAGGCUUCCGGGUCAACUGACUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......((((((.(((((....)))))....((..(((((((....)).....((((.((.....))))))...)))))......(((....))).....)).)))))).......... ( -39.70) >DroYak_CAF1 16742 120 - 1 UCCGACAGGUGUCCUGGUCAGUUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......((((...(((((.(((((((....)))..(((((((....)).....((((.((.....))))))...)))))......(((....)))...))))...)))))....)))). ( -41.70) >consensus UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA .......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). (-37.72 = -38.16 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:04 2006