Locus 10019

Sequence ID 3R_DroMel_CAF1
Location 26,811,500 – 26,811,618
Length 118
Max. P 0.834268
window15966

overview

Window 6

Location 26,811,500 – 26,811,618
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 94.10
Mean single sequence MFE -26.82
Consensus MFE -21.64
Energy contribution -21.72
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.81
SVM decision value 0.73
SVM RNA-class probability 0.834268
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26811500 118 - 27905053
ACAGUUUACUCGAGUACGCCCAGUGGGCGGAAAUCACUUAUAUAACAUCAAUAUUAGCAUGACAAAGGUAUAUAAAUAACUCAAUUUGGUGGUAAAUUCACAAAGCUAAUGAGUCAA-C
...(((.((((((...(((((...)))))....)).................((((((....(((((((.........)))...))))((((.....))))...)))))))))).))-) ( -24.70)
>DroSec_CAF1 20217 117 - 1
ACAGUUUACUCGGGUACGCCCAGUGGGCGGAAAUCACUUAUAUAACGUCAAUAUUAGCAUGCCAAAGGUAUAUAAAUAACUCAAUUUGGUGGUAAAUUCACAAAGUUAAUGAGUCA--C
...(((((((.(((....)))))))))).......((((((.((((.......(((..(((((...))))).))).............((((.....))))...))))))))))..--. ( -24.50)
>DroSim_CAF1 20429 118 - 1
ACAGUUUACUCGAGUACGCCCAGUGGGCGGAAAUCACUUAUAUAACGUCAAUAUUAGCAUGCCAAAGGUAUAUAAAUAACUCAAUUUGGUGGUAAAUUCACAAAGCUAAUGAGUCAA-C
...(((.((((((...(((((...)))))....)).................(((((((((((...))))).................((((.....))))...)))))))))).))-) ( -27.50)
>DroEre_CAF1 24535 119 - 1
UCAGUUUACUCGAGUACGCCCAGUGGGCGGAAAUCACUUAUAUAACAUCAAUAUUAGCAUGCCAAAGGUAUAUAAAUAACUGAAUUUGAUGGUAAAUUCACAAAGCUAAUGAGUCAGCC
...(((.((((((...(((((...)))))....)).................(((((((((((...))))).........((((((((....))))))))....)))))))))).))). ( -29.40)
>DroYak_CAF1 30281 119 - 1
GCAGCUUACUCCAGCACGCCCAGUGGGCGGAUAUCACUUAUAUAACAUCAAUAUUAGCAUGCCAAAGGUAUAUAAAUAACUCGAUUUGCUGGUAAAUUCACAAAGCUAAUGAGUCAGCC
...(((.((((.(((.(((((...)))))......................((((((((((((...)))))..((((......)))))))))))..........)))...)))).))). ( -28.00)
>consensus
ACAGUUUACUCGAGUACGCCCAGUGGGCGGAAAUCACUUAUAUAACAUCAAUAUUAGCAUGCCAAAGGUAUAUAAAUAACUCAAUUUGGUGGUAAAUUCACAAAGCUAAUGAGUCAA_C
.......((((((...(((((...)))))....)).................(((((((((((...))))).............((((.(((.....)))))))))))))))))..... (-21.64 = -21.72 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:08 2006