| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,810,577 – 26,810,667 |
| Length | 90 |
| Max. P | 0.528519 |
| Location | 26,810,577 – 26,810,667 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -17.58 |
| Energy contribution | -19.80 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26810577 90 + 27905053 AGAGGAC--------AUCGGUACAUCGCCGCAGGAUUAGGACGAUGGAGCUGGAG-----------AUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC .((....--------...(((.(((((((.........)).)))))..((((((.-----------(((....))).)))).))....)))((((...))))..))... ( -30.60) >DroSec_CAF1 19334 90 + 1 AGAGGAC--------AUCGGCACAUCGCCGCAGGACUAGGACGAUGGAGCUGGAG-----------AUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC .((....--------...(((.(((((((.........)).)))))..((((((.-----------(((....))).)))).))....)))((((...))))..))... ( -33.00) >DroSim_CAF1 19488 90 + 1 AGAGGAC--------AUCGGCACAUCGCCGCAGGAUUAGGACGAUGGAGCUGGAG-----------AUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC .((....--------...(((.(((((((.........)).)))))..((((((.-----------(((....))).)))).))....)))((((...))))..))... ( -33.00) >DroEre_CAF1 23604 101 + 1 AGAGGAC--------AUUGGUACAUCGCCGCAGGAUUAGGAAGAUGGAGCUGGAGCUGGAGAUGGAAUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC .......--------((((((.((((.((.........))..))))..(((((.((..(..((((((((....))).))))).)..)).))))).....)))))).... ( -32.20) >DroYak_CAF1 29256 98 + 1 ACAGGACAUCGGGACAUUGGGACAUUGCCGCGGGAUUAGGACGAUGGAGCUGGAG-----------AUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC ...((.(((((.((..(((((......)).)))..))....)))))..((((((.-----------(((....))).)))).)).....))((((...))))....... ( -28.60) >DroAna_CAF1 23393 69 + 1 CGAGGGC--------AACAGUG---------AGGAUUAGGGCA-----------------------AUGGAGACAUAUCCAUGCAUGCGUCGCUGAAUCGCCAAUCAAC .((.(((--------..(((((---------(.(......(((-----------------------.((((......)))))))...).))))))....)))..))... ( -21.70) >consensus AGAGGAC________AUCGGUACAUCGCCGCAGGAUUAGGACGAUGGAGCUGGAG___________AUGGAGACAUAUCCAUGCAUGCGCCGGCGAAUCGCCAAUCAAC .................((((.....))))...((((.((.((((...(((((.............(((....))).............)))))..))))))))))... (-17.58 = -19.80 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:07 2006