Locus 10017

Sequence ID 3R_DroMel_CAF1
Location 26,804,806 – 26,804,901
Length 95
Max. P 0.869278
window15964

overview

Window 4

Location 26,804,806 – 26,804,901
Length 95
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 70.26
Mean single sequence MFE -23.07
Consensus MFE -14.11
Energy contribution -14.34
Covariance contribution 0.23
Combinations/Pair 1.19
Mean z-score -1.51
Structure conservation index 0.61
SVM decision value 0.86
SVM RNA-class probability 0.869278
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26804806 95 + 27905053
UGCGUUAUGAAAGUGUGUGUGCAUACUGUAGCGAGUGUGUGUGGGUACACAGGCAAA---AAAAUUAUGGUCUGAUGCAUUUGAUAUAGU-------UUUAUUCA
...(..((((((.((((((((((((((((((....(((.((((....)))).)))..---....)))))))...))))))...))))).)-------))))).). ( -23.80)
>DroSim_CAF1 13667 96 + 1
UGCGUUAUGAAAGUGUGUGUAC-UGCUGUUGCGAGUG--UGUGGGUACACAGACAAA---AAAG-UAUUGUCUGAUGCAUUUCAUUUAGUCG-UC-CUGUAUUGA
.(((..((((((((.(((((((-((((......))).--....)))))))).))...---...(-((((....))))).)))))).....))-).-......... ( -21.60)
>DroYak_CAF1 16116 90 + 1
UGCGUUAUGAAAGUGUGUGUAC-UG-----------G--CGGGGGUACACAGGCAAAAAAAAAG-UAUAGUUCGAUGCAUUUUAUAGUGUUUUUUGAUGCGUUGA
............((.(((((((-(.-----------.--....)))))))).))..........-......((((((((((..(........)..)))))))))) ( -23.80)
>consensus
UGCGUUAUGAAAGUGUGUGUAC_UGCUGU_GCGAGUG__UGUGGGUACACAGGCAAA___AAAG_UAUAGUCUGAUGCAUUUCAUAUAGU___U___UGUAUUGA
(((((((.((..((.(((((((.(((..............))).))))))).))................))))))))).......................... (-14.11 = -14.34 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:07 2006