Locus 10016

Sequence ID 3R_DroMel_CAF1
Location 26,804,627 – 26,804,723
Length 96
Max. P 0.625696
window15963

overview

Window 3

Location 26,804,627 – 26,804,723
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 90.60
Mean single sequence MFE -27.12
Consensus MFE -19.24
Energy contribution -20.32
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.11
Structure conservation index 0.71
SVM decision value 0.19
SVM RNA-class probability 0.625696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26804627 96 + 27905053
ACAGCGGAUCUAGGAAAAGCCUAGGAAAAACCCGGUGAGCAGGGAAAAGCGAGGC--GGGCCAGGCGACAUGUGUGUGUUUUUCUGACACUGGAUAAA
........((((((.....))))))......((((((..(((..(...((..((.--...))..))(((((....))))))..))).))))))..... ( -27.50)
>DroSec_CAF1 13473 96 + 1
ACAGCGGAUCUAGGAAAAGCCUAGGAAAAACCCGGUGAGCAGGGAAAUGCGAGAC--AGGGAAGGCGACAUGUGUGUGUUUUUCUGACACUGGAUAAA
........((((((.....))))))......((((((..(((..(((((((..((--(.(........).))).)))))))..))).))))))..... ( -29.70)
>DroSim_CAF1 13488 96 + 1
ACAGCGGAUCUAGGAAAAGCCUAGGAAAAACCCGGUGAGCAGGGAAAUGCGAGAC--GGGGAAGGCGACAUGUGUGUGUUUUUCUGACACUGGAUAAA
........((((((.....))))))......((((((..(((..(((((((..((--(.(........).))).)))))))..))).))))))..... ( -29.00)
>DroEre_CAF1 17368 97 + 1
ACAGCGGAUCUAGGAAAAGCCUAGGAA-ACCCCGGUUAGCAAGGAAAAGCGAGGAAAAGCGAAGGCAACAUGUGUGUGUUUUUCUGACACUGGAUAAA
.....((.((((((.....))))))..-.))(((((......((((((((........((....)).(((....)))))))))))...)))))..... ( -24.20)
>DroYak_CAF1 15941 92 + 1
ACAGCGGAUCUAGGAAAAGCCUAGGAAAAACCCGGUUGGCAAGGAAAAGCGAGAC------GGGGCAACAUGUGUGUGUUUUUCUGACACUGGAUAAA
........((((((.....))))))......(((((.(....((((((((((.((------(.(....).))).).)))))))))..))))))..... ( -25.20)
>consensus
ACAGCGGAUCUAGGAAAAGCCUAGGAAAAACCCGGUGAGCAGGGAAAAGCGAGAC__AGGGAAGGCGACAUGUGUGUGUUUUUCUGACACUGGAUAAA
........((((((.....))))))......((((((.((........))........(((((((((((....)).)))))))))..))))))..... (-19.24 = -20.32 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:06 2006