Locus 10015

Sequence ID 3R_DroMel_CAF1
Location 26,803,533 – 26,803,626
Length 93
Max. P 0.852333
window15962

overview

Window 2

Location 26,803,533 – 26,803,626
Length 93
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.51
Mean single sequence MFE -27.35
Consensus MFE -18.40
Energy contribution -18.40
Covariance contribution 0.00
Combinations/Pair 1.33
Mean z-score -1.56
Structure conservation index 0.67
SVM decision value 0.79
SVM RNA-class probability 0.852333
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26803533 93 + 27905053
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGCGUUGAAUGGUGGCUAAACAGGCGGAAACGCUAAAACGCGCGC----------GCUCACUCACACAAAACCA-------------
...(((...........))).....((((((((((.....((......)).((((....))))..)))))).))----------)).................------------- ( -24.70)
>DroGri_CAF1 9823 95 + 1
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGUGCUGAAGUGUGGCUAAA-AUGCGGAAACGUUAAAGCUAA--------------------CACACAUAAGCACACACAUGAUUCU
...(((...........)))....((((.((((((...((((((((...-..(((....)))...)))...--------------------)))))...))))))))))....... ( -30.60)
>DroSim_CAF1 12355 93 + 1
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGCGUUGAAUGGUGGCUAAACAGGCGGAAACGCUAAAACGCGCGC----------GCUCACUCACACAUAACCA-------------
...(((...........))).....((((((((((.....((......)).((((....))))..)))))).))----------)).................------------- ( -24.70)
>DroEre_CAF1 16240 93 + 1
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGCGUUGAAUGGUGGCUAAACAGGCGGAAACGCUAAAACGCGCGC----------ACUCACUCACACAAAACCA-------------
...(((...........))).....((((((((((.....((......)).((((....))))..)))))).))----------)).................------------- ( -25.10)
>DroYak_CAF1 14755 103 + 1
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGCGUUGAAUGGUGGCUAAACAGGCGGAAACGCUAAAACGCGCGCGCGCUCACUCGCUCACUCACACAAAACCA-------------
...(((...........)))...(((((.((.((.((.(((((((......((((....)))).....((....)))).))).)).)))).))))))).....------------- ( -28.10)
>DroAna_CAF1 16164 79 + 1
GACGGCAUCAAUCAUACGCCACGAUGUGCUGCGCUGAACUGUGGCUAAACAGGCGGAAACGCCAAGGCGCACAC------------------------ACGCA-------------
...(((...........))).((.((((.((((((....(((......)))((((....))))..)))))))))------------------------)))..------------- ( -30.90)
>consensus
GACGGCAUCAAUCAUACGCCAUGUUGUGCUGCGUUGAAUGGUGGCUAAACAGGCGGAAACGCUAAAACGCGCGC__________GCUCACUCACACAAAACCA_____________
...(((...........))).....(((.((((((.....((......)).((((....))))..))))))))).......................................... (-18.40 = -18.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:05 2006