Locus 10014

Sequence ID 3R_DroMel_CAF1
Location 26,798,511 – 26,798,612
Length 101
Max. P 0.945476
window15961

overview

Window 1

Location 26,798,511 – 26,798,612
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.69
Mean single sequence MFE -32.78
Consensus MFE -24.17
Energy contribution -23.78
Covariance contribution -0.39
Combinations/Pair 1.16
Mean z-score -2.33
Structure conservation index 0.74
SVM decision value 1.35
SVM RNA-class probability 0.945476
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26798511 101 - 27905053
ACCUGGCGCACAGGUGUGGCAUUGUCUGGCCGUCUAGACGUCCUUGCCUCAC--AUUCCAUUUU-CUUGAUUUUCU--UGGCUCAAUUGCCACUUGUUUGCCUUCA
....((((.(((((((.((((.(((((((....)))))))....)))).)))--..........-...........--((((......)))).)))).)))).... ( -31.80)
>DroPse_CAF1 37800 96 - 1
ACCUGCAGCACAGGUGUGGUAUCGUCUGGCCGUCUAGACA--CUUGCCCCCCCACCUCCAUUCU-CCA---CUCCGUCAGGCUCGAUUGCCACUCAGCCGCA----
....((.((..(((((.((((..((((((....)))))).--..))))....))))).......-...---........(((......))).....)).)).---- ( -26.10)
>DroSim_CAF1 7268 101 - 1
ACCUGGCGCACAGGUGUGGCAGUGUCUGGCCGUCUAGACGUCCUUGCCUCCC--AUUCCAUUUU-CCUGAUUUUCG--UGGCUCAAUUGCCACUUGGUUGCCUUCA
....(((((.((((.((((.((((...((((((....))).....)))...)--)))))))...-))))......(--((((......)))))...).)))).... ( -32.40)
>DroEre_CAF1 9360 102 - 1
ACCUGGCGCACAGGUGUGGCAGUGUCUGGCCGUCUAGACGUCCUUGCCACCC--AUUCCAUUUCGCCAGAUUUUCG--CGGCUCAAUUGCCACUUGGCCGCCUUCA
..((((((....((.((((((((((((((....)))))))...)))))))..--...))....))))))......(--((((.(((.......))))))))..... ( -38.50)
>DroYak_CAF1 9553 102 - 1
ACCUGGCGCACAGGUGUGGCAGUGUCUGGCCGUCUAGACGUCCUUGGCUCCC--UUUCCAUUUUGCCAGAUAUUCG--UGGCUCAAUUGCCACUUGGCCGCCUUCA
(((((.....)))))((((((((((((((((((....)))....(((.....--...)))....)))))))))).(--((((......)))))...)))))..... ( -39.80)
>DroPer_CAF1 38171 96 - 1
ACCUGCAGCACAGGUGUGGCAUCGUCUGGCCGUCUAGACA--CUUGCCCCCCCACCUCCAUUCU-CCG---CUCCGUCAGGCUCGAUUGCCACUCAGCCGCA----
....((.((..(((((.((((..((((((....)))))).--..))))....))))).......-...---........(((......))).....)).)).---- ( -28.10)
>consensus
ACCUGGCGCACAGGUGUGGCAGUGUCUGGCCGUCUAGACGUCCUUGCCUCCC__AUUCCAUUUU_CCAGAUUUUCG__UGGCUCAAUUGCCACUUGGCCGCCUUCA
(((((.....)))))(((((...((((((....))))))........................................(((......))).....)))))..... (-24.17 = -23.78 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:04 2006