Locus 10012

Sequence ID 3R_DroMel_CAF1
Location 26,797,924 – 26,798,022
Length 98
Max. P 0.801799
window15958

overview

Window 8

Location 26,797,924 – 26,798,022
Length 98
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 82.85
Mean single sequence MFE -33.53
Consensus MFE -22.31
Energy contribution -23.53
Covariance contribution 1.23
Combinations/Pair 1.17
Mean z-score -2.72
Structure conservation index 0.67
SVM decision value 0.62
SVM RNA-class probability 0.801799
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26797924 98 - 27905053
GAAAAUGGGGAAAACUCUUGGCGG-GUACACAAACC-AUCUGCUGAUAGCCGCCGGGCCAUGAAAACGUGGUUCGCGGUUUCUUC--UCU-----------AUUAUUUUCCUU
...(((((((((.....(..((((-((.........-))))))..).((((((.((((((((....))))))))))))))..)))--)))-----------)))......... ( -34.50)
>DroSec_CAF1 6696 98 - 1
GAAAAUGGGAAAAACUCUUGGCGG-GUACACAAACC-AUCUGCUGAUAGCCGCCGGGCCAUGAAAACGUGGUUCGCGGUUUCUUC--UCU-----------AUUAUUUUCCUU
......(((((((....(..((((-((.........-))))))..).((((((.((((((((....)))))))))))))).....--...-----------....))))))). ( -32.50)
>DroSim_CAF1 6682 98 - 1
GAAAAUGGGGAAAACUCUUGGCGG-GUACACAAACC-AUCUGCUGAUAGCCGCCGGGCCAUGAAAACGUGGUUCGCGGUUUCUUC--UCU-----------AUUAUUUUCCUU
...(((((((((.....(..((((-((.........-))))))..).((((((.((((((((....))))))))))))))..)))--)))-----------)))......... ( -34.50)
>DroEre_CAF1 8810 97 - 1
GAA-AUGGGGAAAACUCUUGGCGG-GUACACAAACC-AUCUGCUGAUGGCCGCCGGGCCAUGAAAACGUGGUUCGCGGUUUCUUC--UCU-----------AUUAUUUUCCUU
..(-((((((((((((...(((((-(....)...((-(((....))))))))))((((((((....))))))))..))))..)))--)))-----------)))......... ( -34.60)
>DroYak_CAF1 9015 88 - 1
GAAAAUGGGGAAA-----U---GG-G----AAAACC-AUCUGCUGAUAGCCGCCGGGCCAUGAAAACGUGGCUCGCGGUUUCUUCUCUCU-----------AUUAUUUUCCUU
...((((((((.(-----(---((-.----....))-)).....((.((((((.((((((((....))))))))))))))...)))))))-----------)))......... ( -33.00)
>DroPer_CAF1 37568 107 - 1
G-AAAUGAGGAAAAUGCUUAGCGGAGUACACAAACCGAAGCGAAAAUGGCCGUCGGGCCAUGAAAACG---UUCGCGGUUCCUUC--UGCUUCUCGCUUUAUUUAUUUUCGUC
.-....((.(((((((...(((((((((....(((((.((((...((((((....)))))).....))---))..))))).....--))).)).)))).....))))))).)) ( -32.10)
>consensus
GAAAAUGGGGAAAACUCUUGGCGG_GUACACAAACC_AUCUGCUGAUAGCCGCCGGGCCAUGAAAACGUGGUUCGCGGUUUCUUC__UCU___________AUUAUUUUCCUU
......(((((((....(((((((.((......))....))))))).(((((.(((((((((....)))))))))))))).........................))))))). (-22.31 = -23.53 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:01 2006