Locus 10011

Sequence ID 3R_DroMel_CAF1
Location 26,793,946 – 26,794,037
Length 91
Max. P 0.586970
window15957

overview

Window 7

Location 26,793,946 – 26,794,037
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 83.19
Mean single sequence MFE -9.55
Consensus MFE -6.11
Energy contribution -6.14
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -2.20
Structure conservation index 0.64
SVM decision value 0.11
SVM RNA-class probability 0.586970
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26793946 91 - 27905053
ACAAA--CAAAUAAAACU--AACAUCACUUUCUGAGUGAAGCUUACAAAACUGCAAAACUGCAUUUGAAAACUGUUUUCCCAACAAAAAAAAAAA
..(((--((.........--....((((((...))))))......((((..((((....)))))))).....))))).................. ( -10.50)
>DroSec_CAF1 2755 83 - 1
ACAAA--CAAAUAAAACU--AACAUCACUUUCUGAGUGAAGCUUACAAAACUGCAAAACUGCAUUUGAAAACUGUUUUCCCAACAAA--------
..(((--((.........--....((((((...))))))......((((..((((....)))))))).....)))))..........-------- ( -10.50)
>DroSim_CAF1 2752 83 - 1
ACAAA--CAAAUAAAACU--AACAUCACUUUCUGAGUGAAGCUUACAAAACUGCAAAACUGCAUUUGAAAACUGUUUUCCCAACAAA--------
..(((--((.........--....((((((...))))))......((((..((((....)))))))).....)))))..........-------- ( -10.50)
>DroEre_CAF1 4893 75 - 1
ACAAA--CAAAUAAAACU--AACAUCACUUUUCGAGUGAAGCUUACAAAA--------CUGCAUUUGAAAACUGUUUUCCCAACAAC--------
.....--...........--.....((.((((((((((.((.........--------)).)))))))))).)).............-------- (  -8.70)
>DroYak_CAF1 4986 75 - 1
ACAAA--CAAAUACAACU--AACAUCACUUUUCGAGUGAAGCUUACAAAA--------CUGCAUUUGAAAACUGUUUUCCCAACAAG--------
.....--...........--.....((.((((((((((.((.........--------)).)))))))))).)).............-------- (  -8.70)
>DroAna_CAF1 6472 83 - 1
ACAAACCCAAGUAAAGAUUAAAAAACACUUUCCGAGUGAAGCUUACAAAA--------CUGCAUUUGAAAACUGUUUUCCGAAACAC----AAAU
.....................((((((.(((.((((((.((.........--------)).)))))).))).)))))).........----.... (  -8.40)
>consensus
ACAAA__CAAAUAAAACU__AACAUCACUUUCCGAGUGAAGCUUACAAAA________CUGCAUUUGAAAACUGUUUUCCCAACAAA________
.......(((((............((((((...)))))).((..................)))))))............................ ( -6.11 =  -6.14 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:00 2006