Locus 10010

Sequence ID 3R_DroMel_CAF1
Location 26,793,438 – 26,793,533
Length 95
Max. P 0.983146
window15956

overview

Window 6

Location 26,793,438 – 26,793,533
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 73.41
Mean single sequence MFE -27.62
Consensus MFE -12.28
Energy contribution -12.17
Covariance contribution -0.11
Combinations/Pair 1.16
Mean z-score -2.48
Structure conservation index 0.44
SVM decision value 1.93
SVM RNA-class probability 0.983146
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26793438 95 - 27905053
---UCGC-CCGCCGAGUGCAUUCA--GCUCAUUGCGAAUGACAAGUUGGGCAAACGUGCAAAACGCACAGAAACGGAAACGGAAGUGAAGAGCGAAAAAUG
---((((-.((((.(.(((((((.--((.....))))))).))...).)))..((((((.....)))).....((....))...))...).))))...... ( -28.40)
>DroPse_CAF1 32638 85 - 1
UAUUCUACCAUUCGAGUGUAUUCUGUGCUCAUUGAAAGUGACAAGUUGGGCAAACGUGCAGAAUGCAC-GUUCCGGAAACGGAAGC---------------
...............((((((((((..(((((.....))))...(((.....))))..))))))))))-.(((((....)))))..--------------- ( -31.20)
>DroSec_CAF1 2251 95 - 1
---UCGC-CCGCCGAGUGCAUUCA--GCUCAUUGCGAAUGACAAGUUGGGCAAACGUGCAAAACACACAGAAACGGAAACGGAAGUGAAGAUCGAAAAAUG
---((((-(((.(..((.(((((.--((.....)))))))))..).)))))..............(((.....((....))...)))......))...... ( -23.70)
>DroSim_CAF1 2248 95 - 1
---UCGC-CCGCCGAGUGCAUUCA--GCUCAUUGCGAAUGACAAGUUGGGCAAACGUGCAAAACGCACAGAAACGGAAACGGAAGUGAAGAGCGAAAAAUG
---((((-.((((.(.(((((((.--((.....))))))).))...).)))..((((((.....)))).....((....))...))...).))))...... ( -28.40)
>DroAna_CAF1 6096 80 - 1
---GACA-GCUACCAGUGCAUUCU--GCUCAGUGAGAGUGACAAGUUGGGCAAACGUGCAAAAUGCACGGAAACGGAAGUCGAAGC---------------
---(((.-(((.....((((((((--........)))))).)).....)))...(((((.....))))).........))).....--------------- ( -22.80)
>DroPer_CAF1 32939 85 - 1
UAUUCUCCCAUUCGAGUGUAUUCUGUGCUCAUUGAAAGUGACAAGUUGGGCAAACGUGCAGAAUGCAC-GUUCCGGAAACGGAAGC---------------
...............((((((((((..(((((.....))))...(((.....))))..))))))))))-.(((((....)))))..--------------- ( -31.20)
>consensus
___UCGC_CCGCCGAGUGCAUUCA__GCUCAUUGAGAAUGACAAGUUGGGCAAACGUGCAAAACGCACAGAAACGGAAACGGAAGC_______________
.................((.(((...((((((((.......)))..)))))....((((.....)))).....((....)))))))............... (-12.28 = -12.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:59 2006