Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,191,133 – 3,191,252 |
Length | 119 |
Max. P | 0.999940 |
Location | 3,191,133 – 3,191,252 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 95.97 |
Mean single sequence MFE | -46.10 |
Consensus MFE | -43.38 |
Energy contribution | -43.54 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.84 |
Structure conservation index | 0.94 |
SVM decision value | 4.70 |
SVM RNA-class probability | 0.999940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3191133 119 + 27905053 AGCAGGAACCGCAAGGACCACAGGGUCCGCAAGGUCCGCAAGGACCGCCGCACGGGCUACAGGGUCCGCAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUCCGUAAAGUUCUAAGAAA ....(((((((((.(((((....((((((...(((((....)))))......))))))....)))))((.((..(....)..)).))......)).)))))))................ ( -49.10) >DroSec_CAF1 10696 119 + 1 AGCAGGAACCGCAAGGACCACAGGGUCCACAAGGUCCGCAAGGGCCGCCGCACGGGCUACAGGGUCCACAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUCCGUAAAGUUCUAAGAAG ....((((((((..(((((....)))))....(((((....)))))...)).((((((...((((.......))))....))))))...........))))))................ ( -45.80) >DroSim_CAF1 17371 119 + 1 AGCAGGAACCGCAAGGACCACAGGGUCCACAAGGUCCGCAAGGGCCGCCGCACGGGCUACAGGGUCCACAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUCCGUAAAGUUCUAAGAAG ....((((((((..(((((....)))))....(((((....)))))...)).((((((...((((.......))))....))))))...........))))))................ ( -45.80) >DroEre_CAF1 12416 119 + 1 AGCAGGAACCGCAAGGACCACAGGGUCCACAAGGUCCGCAAGGACCGCCGCAAGGGCUACAGGGUCCGCAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUCCGUAAUGUUCUAAGAAG ....(((((((((.(((((....(((((....(((((....))))).......)))))....)))))((.((..(....)..)).))......)).)))))))................ ( -46.50) >DroYak_CAF1 16056 119 + 1 AGCAGGAACCGCAAGGACCACAGGGUCCACAAGGUCCGCAAGGACCGCCGCAAGGGCUACAGGGUCCGCAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUAAUUAAUGUUCUAAAAAG ....((((((....)(((((((((..((....(((((....))))).((....))......))..))((.((..(....)..)).))......)).))))).......)))))...... ( -43.30) >consensus AGCAGGAACCGCAAGGACCACAGGGUCCACAAGGUCCGCAAGGACCGCCGCACGGGCUACAGGGUCCGCAGAAUCCAAGGGGUCCGCAACACAUGAUGGUUCCGUAAAGUUCUAAGAAG ....(((((((((.(((((...((..((....(((((....)))))(((.....)))....))..)).......(....))))))(.....).)).)))))))................ (-43.38 = -43.54 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:03 2006