Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,787,505 – 26,787,625 |
Length | 120 |
Max. P | 0.500000 |
Location | 26,787,505 – 26,787,625 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -38.73 |
Consensus MFE | -22.01 |
Energy contribution | -22.43 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.39 |
Mean z-score | -1.63 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26787505 120 - 27905053 UAUCCAUUCGAUGAGGUAGGGCACAGAGUGAACAUCGGGGAGGGUGGGCAAUACAUAUCUUUUGUCCUGGGCCACCUUUUCGAGGCCCAACCUUAGCAUCUCCUUCAUCAAGGGGAUAUU .........(.((((((.((((...(((....).)).(..(((((((.(...(((.......)))....).)))))))..)...)))).)))))).)((((((((....))))))))... ( -43.70) >DroSec_CAF1 90418 120 - 1 UAUCCAUUCGAUGAGGUAGGGCACAGAGUGGACAUCGGGUAGGGUGGGCAAUACAUAUCUCUUGUCCUGGGCCACCUUCUCUAGGCCCAACCUUAACAUCUCCUUCAUCAAGGGGAUAUU .........(.((((((.((((..((((.(((((..(((((..(((.....))).)))))..))))).((....))..))))..)))).)))))).)((((((((....))))))))... ( -44.20) >DroEre_CAF1 92503 120 - 1 UAUCCAUUCGAUGAGGUAGGGAACAGAGUGCACAUCGGGCAGGGUGGGCAAUACAUAUCUCUUGUCCUGGGCCACCUUUUCCAGGCCCAACCUAAGCAUCUCCUUCAUCAAAGGGAUAUU (((((....(((((((..(....).((((((.....((((((((((.......)))....)))))))((((((..........))))))......))).))))))))))....))))).. ( -41.20) >DroWil_CAF1 108480 120 - 1 UAUCCAUUCGACUAGAUAUGGCACGGAUUCAACAUCGGGUAAGGUGGGCAACACAUAUCGACGAUUUUCGCCUACUUUAUCCAGACCUUUUCUCAGCAUAUGCUUCAUAAGUUUUAUGUC ....(((..(((((((...(((...(((.....)))(((((((((((((....................))))))))))))).).))...))).(((....))).....))))..))).. ( -27.55) >DroYak_CAF1 94385 120 - 1 UAUCCAUUCGAUGAGGUAGGGAACGGAGUGGACAUCGGGCAGGGUGGGCAACACAUAUCUCUUGUCCUGGGCCACCUUUUCCAGGCCCAGCCUGAGCAUCUCCUUCAUCAAGGGAAUGUU ..(((....((((((...(....)((((..(...((((((.....((((((..........))))))((((((..........)))))))))))).)..))))))))))...)))..... ( -42.40) >DroAna_CAF1 106222 120 - 1 GAUCCAAUCGAGUAGAUAUGGCACCGUUUGGACAUCCGGUAAGGUUGGGAGAACGAAACGCUUGUCCUCGCCCACCUUCUCGAGGCCAAGCCUUAGCAUCUCCUUCAUUAAGGGCAGGUU ...((((((.....))).))).(((((((((...((.((.(((((.(((((.((((.....)))).))).)).))))))).))..))))))....((....((((....)))))).))). ( -33.30) >consensus UAUCCAUUCGAUGAGGUAGGGCACAGAGUGGACAUCGGGUAGGGUGGGCAAUACAUAUCUCUUGUCCUGGGCCACCUUUUCCAGGCCCAACCUUAGCAUCUCCUUCAUCAAGGGGAUAUU .........(...((((.(((....((.......))((..(((((((.(...(((.......)))....).)))))))..))...))).))))...)((((((((....))))))))... (-22.01 = -22.43 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:59 2006