| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,787,043 – 26,787,311 |
| Length | 268 |
| Max. P | 0.981008 |
| Location | 26,787,043 – 26,787,155 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.08 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -22.76 |
| Energy contribution | -22.63 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26787043 112 - 27905053 GAACGGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUUGUGAGAAUCCUCCUCCUCAUUCCCUUCAGAGGGGCAAUUUUGUAGGAACUGCAUUAGGCUACUAGGCCGGUGUUU (((.((((((((.(((.(((((.(((((......)))))...)))))))).)).)))))).)))....(((((....(((((...)))))...((((....))))..))))) ( -38.80) >DroSec_CAF1 89956 112 - 1 GAACGGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAUUUUGUAGGAACUGCAUUAGACUACUAGGCCGGUGUUU (((.((((((((.(((.(((((....(((((...)))))...)))))))).)).)))))).)))...((((((.(((.....))).))).((((....)))))))....... ( -38.20) >DroSim_CAF1 94199 112 - 1 GAACGGAAUGGGCGGAAGGAAUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAUUUUGUAGGAACUGCAUUAGACUACUAGGCCGGUGUUU (((.((((((((.(((.(((......(((((...))))).....)))))).)).)))))).)))...((((((.(((.....))).))).((((....)))))))....... ( -34.70) >DroEre_CAF1 92041 112 - 1 GAACAGGAUGGGCGGAAGGAUGUGUAUCCAUUUCGAGAUCCUCAUCCUCCUUUCCAUUCCCUUCAGAGACGCAGUUUUCGAGGAACUGCAUUAGGCUACUAGGUCGCUGUUU (((..(((((((.((.((((((.(.(((........))).).)))))).)).)))))))..)))((.((((((((((.....))))))).((((....))))))).)).... ( -37.40) >DroYak_CAF1 93923 112 - 1 GAGCAGAAUGAGCGCAAGAAUUUGUAUCCAUUUCGAGAUCUGAAUCCUCCCUUUCAUUCCCUUCGGAGACGCAAGUUUCGAGGAACUGCAUUAGGCUGCUAGGUCGAUGUUU ..((((((((((.(..((.((((..(((........)))..)))).))..).))))))).(((((.((((....)))))))))...)))....((((....))))....... ( -26.90) >DroAna_CAF1 105763 106 - 1 GUGCAGCACGAGCACAAGGAGU----GCCAUUCUGUGGCA--CUUCCAUCUCCUCGUCCUGUUCACUUCCGCAACGAUUGAGGAACUGCAUCAAGCUACUGGGACGCUGUUU ..(((((..(((.....(((((----(((((...))))))--))))......)))(((((......((((.((.....)).))))..((.....))....)))))))))).. ( -35.80) >consensus GAACAGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAUUUUGGAGGAACUGCAUUAGGCUACUAGGCCGGUGUUU (((.((((((((.((.((((((.((.((......)).))...)))))).)).)))))))).)))...((((((.(((.....))).))).((((....)))))))....... (-22.76 = -22.63 + -0.13)
| Location | 26,787,080 – 26,787,193 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.99 |
| Mean single sequence MFE | -37.14 |
| Consensus MFE | -25.66 |
| Energy contribution | -24.62 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.57 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.981008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26787080 113 - 27905053 CCUUCCUAAGAGUCCCAGAUCGAAAAGCUUGGGUUCCUGAACGGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUUGUGAGAAUCCUCCUCCUCAUUCCCUUCAGAGGGGCAAU ...........(((((.((((.((....)).)))).(((((.((((((((.(((.(((((.(((((......)))))...)))))))).)).)))))).))))).)))))... ( -44.10) >DroSec_CAF1 89993 113 - 1 CCUUCCUAAAAGUCCCAGAUCGAAAAGCUUUGGUUCCUGAACGGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAU ...........((.((.(((((((....))))))).(((((.((((((((.(((.(((((....(((((...)))))...)))))))).)).)))))).))))).)).))... ( -39.80) >DroSim_CAF1 94236 113 - 1 CCUUCCUAAAAGUCCCAGAUCGAAAAGCUUUGGUUCCUGAACGGAAUGGGCGGAAGGAAUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAU ...........((.((.(((((((....))))))).(((((.((((((((.(((.(((......(((((...))))).....)))))).)).)))))).))))).)).))... ( -36.30) >DroEre_CAF1 92078 113 - 1 UCUUCCUAAAAGUCCCAGAUCGAAAAGCUUGGGUUCCUGAACAGGAUGGGCGGAAGGAUGUGUAUCCAUUUCGAGAUCCUCAUCCUCCUUUCCAUUCCCUUCAGAGACGCAGU ............................(((.((..(((((..(((((((.((.((((((.(.(((........))).).)))))).)).)))))))..)))))..)).))). ( -32.90) >DroYak_CAF1 93960 113 - 1 ACUGCCCAAAAGUCCCAGAUCGAAAAGCUUGGGUUCCCGAGCAGAAUGAGCGCAAGAAUUUGUAUCCAUUUCGAGAUCUGAAUCCUCCCUUUCAUUCCCUUCGGAGACGCAAG ..(((..........((((((.....((((((....)))))).(((((.(..(((....)))..).)))))...))))))....((((..............))))..))).. ( -27.84) >DroAna_CAF1 105800 107 - 1 CGUACCCCCGGGUCCCAGUUCGAAAAUCUUGCGGGAUUGUGCAGCACGAGCACAAGGAGU----GCCAUUCUGUGGCA--CUUCCAUCUCCUCGUCCUGUUCACUUCCGCAAC .(.(((....))).).............((((((((.((.((((.(((((.....(((((----(((((...))))))--))))......))))).)))).)).)))))))). ( -41.90) >consensus CCUUCCUAAAAGUCCCAGAUCGAAAAGCUUGGGUUCCUGAACAGAAUGGGCGGAAGGAUUAGCAGCCAUUUCGUGGUGGGAAUCCUCCUCCUCAUUCCCUUCAGAGGCGCAAU ............................(((.((..(((((.((((((((.((.((((((.((.((......)).))...)))))).)).)))))))).)))))..)).))). (-25.66 = -24.62 + -1.05)
| Location | 26,787,193 – 26,787,311 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 90.28 |
| Mean single sequence MFE | -43.67 |
| Consensus MFE | -36.81 |
| Energy contribution | -36.95 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.962059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26787193 118 + 27905053 AAUUGCGCGAGGUUCAACUAUCGUGAGUUGUUUGGCUCUCUGCAGAGGACUCAUUUGGACGACGAACGGAUGCGUCUAAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUUCAGU .....(((((((.....)).))))).((((..(((((((.((((((((.(((.((((((((.((......)))))))))).))).))))))))))))))).))))((......))... ( -45.80) >DroSec_CAF1 90106 118 + 1 AAUUGCGCGAGGUUCAACUAUCGUGAGUUGUUUGGCUCGCUGCAGAGGACUCAAUUGGACGACGAACGGAUGCGUCUAAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUUCAGU .....(((((((.....)).))))).((((..((((((..((((((((.(((..(((((((.((......)))))))))..))).)))))))).)))))).))))((......))... ( -44.40) >DroSim_CAF1 94349 118 + 1 AAUUGCGCGAGGUUCAACUAUCGUGAGUUGUUUGGCUCGCUGCAGAGGACUCAAUUGGACGACGAACGGAUGCGUCUAAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUUCAGU .....(((((((.....)).))))).((((..((((((..((((((((.(((..(((((((.((......)))))))))..))).)))))))).)))))).))))((......))... ( -44.40) >DroEre_CAF1 92191 118 + 1 AAUUGCCCGAGGUUCAACUAUCGUGAGUUGUUUGGCUCGCUGCACAGGACUCAAUUGGACGACGAACGGAUGCGUCUAAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUCCAGU ..........((....((.(((((..((((..((((((..((((.(((.(((..(((((((.((......)))))))))..))).))).)))).)))))).)))).)))))))))... ( -39.90) >DroYak_CAF1 94073 118 + 1 AAUUGCGCGAGGUUCAACUAUCGCGAGUUGUUUGGCUCGCUGCACAGGACUCAAUUGGACGACGAGCGGCUGCGUCUGAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUUCAGU .....(((((((.....)).))))).((((..((((((..((((.(((.(((..(..((((.((......))))))..)..))).))).)))).)))))).))))((......))... ( -42.90) >DroAna_CAF1 105907 118 + 1 AGUGUCGUAAAGUUUAACUAUAGGGAGAUUUUCGGGUCUUUGCAAACGACUCGUUUGGACGAUGAGCGAAUGCGUCUGAAGGAGGCGUUUGUAAGGGCCAUCGAUGACGAUGUUCAGU ..(((((((((((((..(....)..)))))))..((((((((((((((.(((.((..((((((......)).))))..)).))).))))))))))))))....))))))......... ( -44.60) >consensus AAUUGCGCGAGGUUCAACUAUCGUGAGUUGUUUGGCUCGCUGCAGAGGACUCAAUUGGACGACGAACGGAUGCGUCUAAAGGAGGCCUUUGUAAGAGCCAUCGACGAUGAUGUUCAGU .....(((((((.....)).))))).((((((((((((..((((((((.(((..(((((((.((......)))))))))..))).)))))))).))))))..)))))).......... (-36.81 = -36.95 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:57 2006