Locus 10007

Sequence ID 3R_DroMel_CAF1
Location 26,786,732 – 26,786,822
Length 90
Max. P 0.555118
window15951

overview

Window 1

Location 26,786,732 – 26,786,822
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 66.73
Mean single sequence MFE -25.63
Consensus MFE -7.76
Energy contribution -7.02
Covariance contribution -0.75
Combinations/Pair 1.43
Mean z-score -1.87
Structure conservation index 0.30
SVM decision value 0.04
SVM RNA-class probability 0.555118
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26786732 90 - 27905053
GAGGCUUCC---UUGAUCU---------CCUGCU---UUUUGAUCUAGAUCUGGAUCUG---GAUCUU------------GUUUUGGAUUUGGCCUGUGCCCCGCUUGCUAGCCUAAUAU
.((((....---..(((((---------...((.---....(((((((((....)))))---))))..------------))...)))))((((..(((...)))..))))))))..... ( -25.30)
>DroSec_CAF1 89639 96 - 1
GAGGCUUCC---UUGAUCU---------CCUGCU---UUUUGAUCUAGAUCUGGAUCGA---GAUCUAGAUUUG------GUUUUCGUUUUGGCCUCUGCCCCGCUUGUUAGCCUAAUAU
((((((...---.(((...---------((....---....(((((((((((......)---)))))))))).)------)...)))....))))))......(((....)))....... ( -28.70)
>DroSim_CAF1 93882 96 - 1
GAGGCUUCC---UUGAUCU---------CCGGCU---UUUUGAUCUAGAUCUGGAUCGG---GAUCUAGAUUUG------GUUUUCGUUUUGGCCUGUGCCCCGCUUGUUAGCCUAAUAU
.(((((..(---..(..(.---------(.((((---...(((.((((((((((((...---.)))))))))))------)...)))....)))).).).....)..)..)))))..... ( -29.90)
>DroEre_CAF1 91724 99 - 1
UAGGCUUCC---UUGAUUUGGAUCUUGACCUGCU---UUUCGAUUUCGAUUUAGAUCUG---GAUCUA------------GUUUUGGACUUAGCCUGGGCCCCGCUUGCUAGCCUAAUAU
(((((.(((---..((((.((((((.((.(((..---..(((....)))..))).)).)---))))))------------)))..)))..((((..((((...))))))))))))).... ( -28.60)
>DroYak_CAF1 93600 102 - 1
CAGACUUUC---UUGACUUCGAUCUCGACCUGCUCCGCUUCGAUUUCGAUCUAGAUCUG---GAUUUG------------GUUUUGGUUUUUGCCUGGGCUCCGCUCGUUAGUCUAAUAC
.(((((..(---......((((..((((...((...)).))))..))))....((..((---((....------------(((..(((....)))..))))))).)))..)))))..... ( -21.90)
>DroAna_CAF1 105446 107 - 1
GACACUACCUCUUUGCA-G---------UCGGCU---UUUAGAUCUAGAUUUGGAACGUUUCUUUCUAGAUUGCUUUCUUCUUUUGGAUUUUGACGAAGCUCCUCCCUUGACUCUCACCC
................(-(---------((((((---((.(((((((((...((((.((.(((....)))..)).))))...)))))))))....))))))........))))....... ( -19.40)
>consensus
GAGGCUUCC___UUGAUCU_________CCUGCU___UUUUGAUCUAGAUCUGGAUCGG___GAUCUA____________GUUUUGGAUUUGGCCUGUGCCCCGCUUGUUAGCCUAAUAU
.(((((...................................(((....)))((((((.....))))))..........................................)))))..... ( -7.76 =  -7.02 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:55 2006