| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,779,855 – 26,779,952 |
| Length | 97 |
| Max. P | 0.991386 |
| Location | 26,779,855 – 26,779,952 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.82 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -8.36 |
| Energy contribution | -9.06 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.32 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26779855 97 - 27905053 AAUAGGCGACGCCGUCGGAU-GCGAAAAGAAUCGCUGUUUAGUUCGCAUCAGACACACAGAGAUGUGCACUUGGAAAAAUCAGGUGAAAAUGCAUUGA ....(((...)))(((.(((-(((((..((((....))))..)))))))).))).((((....))))(((((((.....)))))))............ ( -29.20) >DroSec_CAF1 83189 96 - 1 AAUAGGCGACGCCGUCGGAU-GCGAAAAGAAUCGCUGUUUAGUUCGCAUCAGAAACACAGAGAUGUGCACUUAGAAAAAUCAGGUGGAAAUGCAUUG- .....(((.((((.((.(((-(((((..((((....))))..)))))))).))..((((....))))...............))))....)))....- ( -24.60) >DroSim_CAF1 86970 97 - 1 AAUAGGCGACGCCGUCGGAU-GCGAAAAGAAUCGCUGUUUAGUUCGCAUCAGAAACACAGAGAUGCGCACUUGGAAAAAUCAGGUGAAAGUGCAUUGA ....((((....)))).(((-(((((..((((....))))..))))))))...........(((((((((((((.....))))))....))))))).. ( -28.00) >DroEre_CAF1 84768 97 - 1 AAUAGGCGAUGCCGUCGGAU-GCGAAGAGAAUCGCUGUUUAGUGUGCAGUGGAAACCCAGAGAUGUGCACUUGCAAAAGUCUGGUGAAAAAGCAUACA ....((((((....(((...-.))).....)))))).....((((((...(....)(((((....(((....)))....))))).......)))))). ( -30.20) >DroWil_CAF1 100586 76 - 1 AAUAGGUGACGCUGCUUGGUAGAAAAAAGAAU-GCAGU-----GAGCCAAAGCUACAACGAAA-------GAGGAAAAGUCAGCU---------UUAA ....(((..((((((.................-)))))-----).)))((((((....(....-------)..((....))))))---------)).. ( -18.13) >consensus AAUAGGCGACGCCGUCGGAU_GCGAAAAGAAUCGCUGUUUAGUUCGCAUCAGAAACACAGAGAUGUGCACUUGGAAAAAUCAGGUGAAAAUGCAUUGA ....((((....)))).(((.((((......)))).....(((.((((((...........)))))).))).......)))................. ( -8.36 = -9.06 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:51 2006