Locus 10004

Sequence ID 3R_DroMel_CAF1
Location 26,779,258 – 26,779,356
Length 98
Max. P 0.688494
window15946

overview

Window 6

Location 26,779,258 – 26,779,356
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -38.55
Consensus MFE -23.56
Energy contribution -23.78
Covariance contribution 0.23
Combinations/Pair 1.19
Mean z-score -1.68
Structure conservation index 0.61
SVM decision value 0.32
SVM RNA-class probability 0.688494
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26779258 98 - 27905053
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGGAGGGACUGGAAACUAAGUCACCAAGUCAG--------UGGGGCUGU--------------
.((((..(((((((((((..((....))..))))..)))).....((.(((((..(((((.....)))))..))))).))......)))--------..))))...-------------- ( -40.60)
>DroSec_CAF1 82622 98 - 1
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGGAGGGACUGGAAACUAAGUCACCAAGUCAG--------UGGGGCUGU--------------
.((((..(((((((((((..((....))..))))..)))).....((.(((((..(((((.....)))))..))))).))......)))--------..))))...-------------- ( -40.60)
>DroSim_CAF1 86390 98 - 1
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGGAGGGACUGGAAACUAAGUCACCAAGUCAG--------UGGGGCUGU--------------
.((((..(((((((((((..((....))..))))..)))).....((.(((((..(((((.....)))))..))))).))......)))--------..))))...-------------- ( -40.60)
>DroEre_CAF1 84175 120 - 1
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGGAGGGACUGGAAACUAAGUCACCAAGUCAGUGGGACUGUGGGACUGUGGGACUUUGGGCCG
.((..((..(((((((((..((....))..))))..)))))..)).))...((...((.((((..(((....)..((((.(((((((.....)))).)))))))..))..)))).)))). ( -42.30)
>DroYak_CAF1 85930 106 - 1
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGUAGGGACUGGAAACUAAGUCUCCAAGUCACCGAGUCAGUGGGUCUGU--------------
.(.((..(((((((((((..((....))..))))..)))).(((.((.((((((..((...))(((((....)..)))))))))).))..))).)))..)).)...-------------- ( -35.30)
>DroAna_CAF1 96881 90 - 1
CGCCUUCGUGGCACACGUUGCGUAUACGUGACGUUUGCAUUGUUGUGCCCCAGCACGACGGAAGACAAGAACGUAAGUCAGCA-----G--------UUGGGC-----------------
.((((...(((((.((((..((....))..)))).))).(((((((((....)))))))))..(((..........)))..))-----.--------..))))----------------- ( -31.90)
>consensus
CGCCUUGCUGGCGCACGUUGCGUAUACGUGAUGUUUGCGCUUUCAUGCCUUGGAAUCCGGAGGGACUGGAAACUAAGUCACCAAGUCAG________UGGGGCUGU______________
.(((((...(((((((((..((....))..))))..)))))((((.....)))).......((((((........)))).))................)))))................. (-23.56 = -23.78 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:50 2006