Locus 10003

Sequence ID 3R_DroMel_CAF1
Location 26,778,392 – 26,778,493
Length 101
Max. P 0.945776
window15945

overview

Window 5

Location 26,778,392 – 26,778,493
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 77.82
Mean single sequence MFE -17.65
Consensus MFE -12.75
Energy contribution -12.87
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.72
SVM decision value 1.36
SVM RNA-class probability 0.945776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26778392 101 - 27905053
UGCAAAUUGCAUUUCCAAAAAAAAUGCGAAUUCCUCGUCGAUGGAAGGUAAAGUUAUUUAUUUCCCUUUAAAUAAAUAUAGAUGAUUGCCAUGGCGCAAAC
(((...((((((((.......)))))))).......(((.((((..........(((((((((......)))))))))..........))))))))))... ( -20.85)
>DroSec_CAF1 81757 80 - 1
UGCAAAUCGCAUUUCCAG----AGUGCGAA-----------------GUAAAGUUAUUUAUUUCCCUUUACAUAAAUAUGUAUGAUUGCCAUUACACAAAC
.((((.((((((((...)----))))))).-----------------((((((..(......)..))))))..............))))............ ( -15.60)
>DroSim_CAF1 85523 82 - 1
UGCAAAUCGCAUUUCCAGA--GAGUGCGAA-----------------GUAAAGUUAUUUAUUUCCCUUUACUUAAAUAUAGAUGAUUGCCAUUACACAAAC
.((((.((((((((.....--))))))))(-----------------((((((..(......)..))))))).............))))............ ( -16.50)
>consensus
UGCAAAUCGCAUUUCCAGA___AGUGCGAA_________________GUAAAGUUAUUUAUUUCCCUUUACAUAAAUAUAGAUGAUUGCCAUUACACAAAC
.((((.((((((((.......))))))))..................((((((..(......)..))))))..............))))............ (-12.75 = -12.87 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:49 2006