| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,777,255 – 26,777,347 |
| Length | 92 |
| Max. P | 0.601360 |
| Location | 26,777,255 – 26,777,347 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 87.17 |
| Mean single sequence MFE | -17.64 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26777255 92 - 27905053 ------CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUCACCAUUUAC-------------------CUAC ------..((.(((.........(((((....((((....)))))))))......((((..(((((....)))))..)))).....))).))..-------------------.... ( -16.30) >DroSec_CAF1 80613 92 - 1 ------CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUCGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACCAUUUAC-------------------CUAC ------..((.(((.........(((((...(((....)))...)))))......((((..(((((....)))))..)))).....))).))..-------------------.... ( -17.90) >DroSim_CAF1 84374 92 - 1 ------CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACCAUUUAC-------------------CUAC ------..((.(((.........(((((....((((....)))))))))......((((..(((((....)))))..)))).....))).))..-------------------.... ( -16.30) >DroEre_CAF1 82120 91 - 1 ------CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACCAUUUG--------------------CUCC ------(((((.((.........(((((....((((....)))))))))......((((..(((((....)))))..)))).....)))))))--------------------.... ( -17.40) >DroYak_CAF1 83889 111 - 1 ------CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACCAUUUACCUCCCCUGCUACCUGCAACCUCC ------..((.(((.........(((((....((((....)))))))))......((((..(((((....)))))..)))).....))).))........(((.....)))...... ( -18.60) >DroAna_CAF1 94764 91 - 1 CCAGUCCAGAUUGGACAAAGUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACC--------------------------UGC ...((((.....)))).(((((((((((..(((((((...............)))))))..)).)))))))))...............--------------------------... ( -19.36) >consensus ______CAGAUUGGACAAACUUUGCUCGCCAAAUUGUUAUUAAUUGAGCUUUAUAGUUUUUCGAAGCGAACUUCGUUAAACAUUUACCAUUUAC___________________CUAC ...........(((.........(((((....((((....)))))))))......((((..(((((....)))))..)))).....)))............................ (-15.74 = -15.77 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:47 2006