Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,190,131 – 3,190,236 |
Length | 105 |
Max. P | 0.633130 |
Location | 3,190,131 – 3,190,236 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.55 |
Mean single sequence MFE | -37.82 |
Consensus MFE | -25.05 |
Energy contribution | -26.17 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.83 |
Structure conservation index | 0.66 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3190131 105 + 27905053 UCCACAGGGUCCACAGGGUCCACAGCAGGAUCCGCACGGCCCACAUCGGGGUCCACAAGGUCCACAGCAGGGACCACA------GCAGUAAUAUCC---------GCAGCACGAUCCACA ......(((((....((((((......))))))((..(((((......))))).....(((((.......)))))...------((.(......).---------)).))..)))))... ( -36.50) >DroSec_CAF1 9586 105 + 1 UCCACAGGGUCCACAGGGUCCACAGCAGGAUCCGCACGGACCACAUCGGGGUCCACAAGGUCCACAGCAGGGACCACA------GCAGUAACAUCC---------GCAGCACGAUCCACA ......(((((....((((((......))))))((..(((((.......)))))....(((((.......)))))...------((.(......).---------)).))..)))))... ( -37.50) >DroSim_CAF1 16201 105 + 1 UCCACAGGGUCCACAGGGUCCACAGCAGGAUCCGCACGGACCACAUCGGGGUCCACAAGGUCCACAGCAGGGACCACA------GCAGUAACAUCC---------GCAGCACGAUCCACA ......(((((....((((((......))))))((..(((((.......)))))....(((((.......)))))...------((.(......).---------)).))..)))))... ( -37.50) >DroEre_CAF1 10938 120 + 1 UCCACAGGGUCCACAGGGUCCACAGCAGGGUCCACACGGACCGCAACAUGGUCCACAAGGUCGACAGCAGGGUCCACAGGGGGAGCAGCAAUAGCCGCAGGGUCCGCAGCACGAUCCACA (((...((..((...((..((......))..))....((((((.....))))))...............))..))....)))..((.((....)).)).(((((........)))))... ( -39.30) >DroYak_CAF1 15024 111 + 1 UCCACAG---------GGUCCACAGCAGGAUCCACACGGACCACAACGUGGUCCACAAGGUCCACAGCAGGGUCCACAGGGAGAGCAGUAAUAUCCGCAAGGUCCACAGCACGAUCCACA (((...(---------(((((......))))))....(((((.....((((.((....)).)))).....)))))....)))..((.((.....((....))...)).)).......... ( -38.30) >consensus UCCACAGGGUCCACAGGGUCCACAGCAGGAUCCGCACGGACCACAUCGGGGUCCACAAGGUCCACAGCAGGGACCACA______GCAGUAAUAUCC_________GCAGCACGAUCCACA ......(((((.....(((((...((.(((.((....(((((.......)))))....)))))...))..))))).........((.((................)).))..)))))... (-25.05 = -26.17 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:02 2006