Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 47,662 – 47,756 |
Length | 94 |
Max. P | 0.954669 |
Location | 47,662 – 47,756 |
---|---|
Length | 94 |
pre Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -17.95 |
Energy contribution | -18.98 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.28 |
Mean z-score | -2.60 |
Structure conservation index | 0.56 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 47662 94 - 27905053 GCUCAAAUGUUCACGUAGUAUGAUUGGACGCCCUAGGGCGUCCCUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGGGCUCCCAAUUGAGU ((((((.(((((.............(((((((....)))))))((((((............))))))))))).....(((....))).)))))) ( -35.20) >DroSec_CAF1 30536 94 - 1 GCUCAAAUGUACACCCAGUAUGAUUGGGCGCCUUAGGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGGGCUCCCAAUUGAGC ((((((.((....((((((((..(((((((((....)))))).((((((............))))))...)))))))))))....)).)))))) ( -38.20) >DroSim_CAF1 25181 94 - 1 GCUCAAAUGUACACCCAGUAUGAUUGGGCGCCUUAGGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUGCUGGGCUCCCAAUUGAGC ((((((.((....((((((((..(((((((((....)))))).((((((............))))))...)))))))))))....)).)))))) ( -38.20) >DroEre_CAF1 42338 94 - 1 GCUCAAAUGUACAUACAGUAUGAUUGGACGCCCUAAGGCGCCACUUACCUUUACACAGCUCGGUGAGGAGGAAGUACUGAGCUCCCAAUUGAGA .(((((.((......((((((...(((.((((....)))))))....((((..(((......)))..))))..))))))......)).))))). ( -29.50) >DroYak_CAF1 43404 94 - 1 GCUCAAGUGUACAUACUGUAUGAUUGGACGCUCUAAGGCGCCACUUACCUUUACACAGCUCGGUGAGAAGCAGGUACUGAGCUCCUAAUUGAGC (((((((((((((((...))))..(((.((((....)))))))........)))))(((((((((.........))))))))).....)))))) ( -30.30) >DroAna_CAF1 42029 76 - 1 ACUAAA-UA-----CUAGUA------------CUAAGUGAUAUCAUACCUUUACAGAGCUCCGAGAGGAGCAGGUACUGAGCUCCCUGAUUGGA ......-..-----(((((.------------...((.((..((((((((.......(((((....)))))))))).)))..)).)).))))). ( -21.41) >consensus GCUCAAAUGUACACCCAGUAUGAUUGGACGCCCUAAGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGAGCUCCCAAUUGAGC ((((((...........(((....(((.((((....)))))))..)))........(((((((((.........))))))))).....)))))) (-17.95 = -18.98 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006