Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,974,520 – 2,974,612 |
Length | 92 |
Max. P | 0.853369 |
Location | 2,974,520 – 2,974,612 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.98 |
Mean single sequence MFE | -28.06 |
Consensus MFE | -22.24 |
Energy contribution | -22.77 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.16 |
Mean z-score | -2.64 |
Structure conservation index | 0.79 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2974520 92 + 23771897 CUGGAAUUAUAGCCACAAAGAUCCGCUUGCCCAGUGCAAACAAAAGGCCAGCAAAUGUCAUAUUUUACGGCCACAUUUGCUGGCCUUGGUCC----- .(((........)))....((((.(.((((.....)))).)..(((((((((((((((..............))))))))))))))))))).----- ( -29.84) >DroSec_CAF1 8773 92 + 1 CUGGAAUUAUAGCCACAAAGAUCCGCUGGCCCAGUGCAAACAAAAGGCCAGCAAUUGUCAUAUUUUACGGCCACUUUUGCUGGCCUUGGUCC----- .(((........)))....((((.(((((((...((....))...)))))))................((((((....).)))))..)))).----- ( -27.70) >DroSim_CAF1 8732 92 + 1 CUGGAAUUAUAGCCACAAAGAUCCGCUGGCCCAGUGCAAACAAAAGGCCAGCAAAUGUCAUAUUUUACGGCCACUUUUGCUGGCCUUGGUCC----- .(((........)))....((((.(((((((...((....))...)))))))................((((((....).)))))..)))).----- ( -27.70) >DroEre_CAF1 11053 92 + 1 CUGGAAUUAUAGCCACACAGAUCCGUUGGCCCAGUGCAAACCAAAGGCCAGCAAAUGUCAUAUUUUACGGCCACUUUUGCUGGCCUUGGUAA----- ((((.......((((.((......)))))))))).....(((((.((((((((((.(((.........)))....)))))))))))))))..----- ( -32.31) >DroYak_CAF1 8924 92 + 1 CUGGAAUUAUAGCCACAAAGAUCCGCUGGCCCAGUGCAAACAAAAGGCCAGCAAAUGUCAUAUUUUACGGCCACUUUUGCUGGCCUUGGUAA----- ...........((((.........(((((((...((....))...)))))))................((((((....).))))).))))..----- ( -28.00) >DroAna_CAF1 8199 82 + 1 ---------------CCGAUAUACGUUGGCUUAAUGCAAACAAAAGGCUAGCAAAUAUCAUAUUUUAUGGCCACUUUCGUUGGCCUUGGUCGGUUGG ---------------(((((....((((((((..((....))..))))))))................(((((.......)))))...))))).... ( -22.80) >consensus CUGGAAUUAUAGCCACAAAGAUCCGCUGGCCCAGUGCAAACAAAAGGCCAGCAAAUGUCAUAUUUUACGGCCACUUUUGCUGGCCUUGGUCC_____ ...........((((.........(((((((...((....))...)))))))................((((((....).))))).))))....... (-22.24 = -22.77 + 0.53)
Location | 2,974,520 – 2,974,612 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.98 |
Mean single sequence MFE | -30.96 |
Consensus MFE | -23.50 |
Energy contribution | -25.20 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.04 |
Mean z-score | -2.76 |
Structure conservation index | 0.76 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2974520 92 - 23771897 -----GGACCAAGGCCAGCAAAUGUGGCCGUAAAAUAUGACAUUUGCUGGCCUUUUGUUUGCACUGGGCAAGCGGAUCUUUGUGGCUAUAAUUCCAG -----((((((((((((((((((((...((((...))))))))))))))))))(((((((((.....)))))))))......))).......))).. ( -35.51) >DroSec_CAF1 8773 92 - 1 -----GGACCAAGGCCAGCAAAAGUGGCCGUAAAAUAUGACAAUUGCUGGCCUUUUGUUUGCACUGGGCCAGCGGAUCUUUGUGGCUAUAAUUCCAG -----(((....(((((...((((...((((........))....((((((((..((....))..))))))))))..)))).))))).....))).. ( -32.80) >DroSim_CAF1 8732 92 - 1 -----GGACCAAGGCCAGCAAAAGUGGCCGUAAAAUAUGACAUUUGCUGGCCUUUUGUUUGCACUGGGCCAGCGGAUCUUUGUGGCUAUAAUUCCAG -----(((....(((((.......)))))((...(((....((((((((((((..((....))..))))))))))))...))).))......))).. ( -33.50) >DroEre_CAF1 11053 92 - 1 -----UUACCAAGGCCAGCAAAAGUGGCCGUAAAAUAUGACAUUUGCUGGCCUUUGGUUUGCACUGGGCCAACGGAUCUGUGUGGCUAUAAUUCCAG -----..((((((((((((((..(((..((((...)))).)))))))))))).))))).....(((((((((((....))).)))).......)))) ( -32.61) >DroYak_CAF1 8924 92 - 1 -----UUACCAAGGCCAGCAAAAGUGGCCGUAAAAUAUGACAUUUGCUGGCCUUUUGUUUGCACUGGGCCAGCGGAUCUUUGUGGCUAUAAUUCCAG -----...(((.(((((.......)))))............((((((((((((..((....))..)))))))))))).....)))............ ( -31.50) >DroAna_CAF1 8199 82 - 1 CCAACCGACCAAGGCCAACGAAAGUGGCCAUAAAAUAUGAUAUUUGCUAGCCUUUUGUUUGCAUUAAGCCAACGUAUAUCGG--------------- ....((((....(((((.(....)))))).....(((((.....(((.(((.....))).))).........))))).))))--------------- ( -19.84) >consensus _____GGACCAAGGCCAGCAAAAGUGGCCGUAAAAUAUGACAUUUGCUGGCCUUUUGUUUGCACUGGGCCAGCGGAUCUUUGUGGCUAUAAUUCCAG ........(((.(((((.(....))))))............((((((((((((..((....))..)))))))))))).....)))............ (-23.50 = -25.20 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:31 2006