Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,969,721 – 2,969,833 |
Length | 112 |
Max. P | 0.578189 |
Location | 2,969,721 – 2,969,833 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -20.02 |
Consensus MFE | -9.89 |
Energy contribution | -13.41 |
Covariance contribution | 3.52 |
Combinations/Pair | 1.14 |
Mean z-score | -2.10 |
Structure conservation index | 0.49 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2969721 112 + 23771897 AAAAAAGAAAUAAAAGCACAACUUAUAAACAUUCAAACUUUUGGCAGCUACUUUGAAUAUA--------UAAGAAGCGAAAAUCAAAAGUGAUUGGUAAUGUUUAUGACAUUAGCAGGUA ...............((.....((((((((((((..((((((((..(((.(((........--------.))).))).....)))))))).....).))))))))))).....))..... ( -20.40) >DroSec_CAF1 3959 112 + 1 AAAAAAGAAAUAAAAGCACAACUUAUAAACAUUCAAACUUUUGUCAGCUACUUUGAAUGUA--------UAAGUAGCGAAAAUCAAAAGUGAUUGUUAAUGUUUAUGACAUUAGCAGGUA ...............((.....(((((((((((((((((((((...(((((((........--------.)))))))......)))))))..)))..))))))))))).....))..... ( -24.20) >DroSim_CAF1 3950 112 + 1 AAAAAAUAAAUAAAAGCACAACUUAUAAACAUUCAAACUUUUGGCAGCUACUUUGAAUGUA--------UAAGUAGCGAAAAUCAAAAGUGAUUGUUAAUGUUUAUGACAUUAGCAGGUA ...............((.....((((((((((((((((((((((..(((((((........--------.))))))).....))))))))..)))..))))))))))).....))..... ( -24.50) >DroEre_CAF1 3924 102 + 1 AAA---AAAAUAAAAGCACAACGUAUAGACAUUGAAACUUUUGGCAGCUACUUUGAAUUUA--------------GAAAAAAUCAAAAGGAAAUUUUAGUGUU-AUGAUAUUAGCAAGUU ...---.........((......(((.(((((((((((((((((......((........)--------------)......)))))))....))))))))))-)))......))..... ( -12.20) >DroYak_CAF1 3999 116 + 1 AAC---AAAAUAAAAGCACAACGUAUACACAAUCAA-CCUUUGGCAGCUACUUAGAAUAUACAUAUGUAUGUGUGGCAAAAAUCCAAAGGAAAUUUUAAUGUUCAUCAAAUUAGCAGGUA ...---.........((.....((....))......-(((((((..(((((.....((((((....)))))))))))......))))))).......................))..... ( -18.80) >consensus AAAAAAAAAAUAAAAGCACAACUUAUAAACAUUCAAACUUUUGGCAGCUACUUUGAAUAUA________UAAGUAGCGAAAAUCAAAAGUGAUUGUUAAUGUUUAUGACAUUAGCAGGUA ...............((.....(((((((((((...((((((((..(((((((.................))))))).....)))))))).......))))))))))).....))..... ( -9.89 = -13.41 + 3.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:29 2006