Locus 996

Sequence ID 3L_DroMel_CAF1
Location 2,967,363 – 2,967,480
Length 117
Max. P 0.622911
window1542

overview

Window 2

Location 2,967,363 – 2,967,480
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -30.95
Consensus MFE -19.70
Energy contribution -22.03
Covariance contribution 2.34
Combinations/Pair 1.13
Mean z-score -1.56
Structure conservation index 0.64
SVM decision value 0.18
SVM RNA-class probability 0.622911
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2967363 117 - 23771897
CCGGGAUAAACAAGUUGGGAACAGGGUGUGCGUGGGCACACAUCUUGUUUAACUUAAGUGACAAUGAAAGGUCAAAGUUUACGCAUGCUUAAAAGGAGACUCAAUAGUUAAACCAAC
.............(((((.(((.((((((((((((((......((((.......))))((((........))))..))))))))))))))...((....)).....)))...))))) ( -31.20)
>DroSec_CAF1 1609 117 - 1
CCGGGAUAAACAAGUUGGGAACAGUGUGUGCGUGGGCACACAUCUUGUUUAACUUAAAUGACAAUGAAAGGUCAAAGUUUACGCAUGCUUAAAAGGAGACUCCAUAGUUAAACCAAC
..((..((((((((.((....))((((((((....)))))))))))))))).......((((.(((...((((....((((.(....).))))....)))).))).))))..))... ( -29.30)
>DroSim_CAF1 1637 117 - 1
CCGGGAUAAACAAGUUGGGAACAGGGUGUGCGUGGGCACACAUCUUGUUUAACUUAAGUGACAAUGAAAGGUCAAAGUUUACGCAUGCUUAAAAGGAGACUCAAUAGUUAAACCAAC
.............(((((.(((.((((((((((((((......((((.......))))((((........))))..))))))))))))))...((....)).....)))...))))) ( -31.20)
>DroEre_CAF1 1631 117 - 1
CCGGGUUAAACAAGUUGGGAACAGGGUGUGCGUGGGCACAUAUCUUGUUCAAGUUAAGUGACAAUGAAAGGUCAAAGCUUACGCAUGCUUAAAAGCGGACUCAAUAGUUAAACCAAC
...((((.(((..((((((..(.....((((((((((......((((.......))))((((........))))..))))))))))(((....))))..)))))).))).))))... ( -33.20)
>DroYak_CAF1 1616 117 - 1
CCGGGAUAAACAAGUUGGGAACAGGGUGUGCGUGGGCACACAUCUUGUUCAAGUUAAGUGACAAUGAAAGGUCAAAGUUUACGCAUGCUUAAAAGGAGACUCAAUAGUUAAACCAAC
.............(((((.(((.((((((((((((((......((((.......))))((((........))))..))))))))))))))...((....)).....)))...))))) ( -31.20)
>DroPer_CAF1 1715 99 - 1
------CUGCCCCUGUC-------CCUGCCCCUGACCCUUCCACGUGGCCAAGUGGUGUGACAAUGGAAGGUCAAAGUUUACUUAUGCCGAAAAGGG--CUUCGGGGUC---UCCAC
------....(((((..-------...((((.(((((.(((((.((.(((.....).)).))..))))))))))(((....)))..........)))--)..)))))..---..... ( -29.60)
>consensus
CCGGGAUAAACAAGUUGGGAACAGGGUGUGCGUGGGCACACAUCUUGUUCAACUUAAGUGACAAUGAAAGGUCAAAGUUUACGCAUGCUUAAAAGGAGACUCAAUAGUUAAACCAAC
.............(((((.(((.(((((((((((((((((.....)))..........((((........))))..))))))))))))))...((....)).....)))...))))) (-19.70 = -22.03 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:28 2006