Locus 992

Sequence ID 3L_DroMel_CAF1
Location 2,961,929 – 2,962,038
Length 109
Max. P 0.535008
window1531

overview

Window 1

Location 2,961,929 – 2,962,038
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -26.14
Consensus MFE -24.29
Energy contribution -23.93
Covariance contribution -0.36
Combinations/Pair 1.13
Mean z-score -1.17
Structure conservation index 0.93
SVM decision value 0.00
SVM RNA-class probability 0.535008
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2961929 109 + 23771897
GUUUGUGCACAAUAGCACACAAGAGCCGCAAACUGUGGCAGCAAAAAGCUUUUACAUAUUCAUCAGCCUACGAUGUCUUCAAGGUCUCAAAAAGUGGGUGGAAUCCUGU
...(((((......))))).....(((((.....)))))(((.....)))...(((.((((....((((((..((.((....))...))....)))))).))))..))) ( -25.40)
>DroSec_CAF1 190550 109 + 1
GUUUGUGCACAAUGGCACACAAGAGCCACAAAAUGUGGCAGCAAAAAGCUUUAACAUAUUCAUCAGCCCACAAAAGCUUCAAGGUCUCAAAAAGUGGGUGGAAUCCAGU
...(((((......))))).....(((((.....)))))(((.....))).......((((....((((((...((((....)).))......)))))).))))..... ( -26.40)
>DroSim_CAF1 176682 109 + 1
GUUUGUGCACAAUGGCACACAAGAGCCACAAAAUGUGGCAGCAAAAAGCUUUUACAUAUUCAUCAGCCUACGAAAUCUUCAAGGUCUCAAAAAGUGGGUGGAAUCCAGU
...(((((......))))).....(((((.....)))))(((.....))).......((((....((((((((.(((.....))).)).....)))))).))))..... ( -25.60)
>DroEre_CAF1 198626 109 + 1
GUUUGUGCAUAAUGGCACACAAGAGCCGCAAACUGUGGCAGCAAAAAGCUUUUACAUAUUCAUCAGCCUACAAAAUCCUCAGGACCUCAAAAAGUGGGUGGAAUCUUGU
....((((......))))(((((((((((.....)))))(((.....)))............((.((((((......................)))))).)).)))))) ( -27.65)
>DroYak_CAF1 202956 109 + 1
GUUUGUGCAUAAUGGCACACAAGAGCCGCAAACUGUGGCAGCACAAAGCUUUUACAUAUUCAUCAGCCUACAACAUUUUCAAGACCUCAUAGAGUGGGCGUAUUCCUGU
.(((((((....((.....))...(((((.....))))).)))))))..................((((((......................)))))).......... ( -25.65)
>consensus
GUUUGUGCACAAUGGCACACAAGAGCCGCAAACUGUGGCAGCAAAAAGCUUUUACAUAUUCAUCAGCCUACAAAAUCUUCAAGGUCUCAAAAAGUGGGUGGAAUCCUGU
...(((((......)))))...(((((((.....)))))(((.....))).........)).((.((((((......................)))))).))....... (-24.29 = -23.93 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:17 2006