Locus 991

Sequence ID 3L_DroMel_CAF1
Location 2,961,751 – 2,961,844
Length 93
Max. P 0.782477
window1530

overview

Window 0

Location 2,961,751 – 2,961,844
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 88.74
Mean single sequence MFE -28.63
Consensus MFE -24.07
Energy contribution -24.50
Covariance contribution 0.43
Combinations/Pair 1.20
Mean z-score -2.02
Structure conservation index 0.84
SVM decision value 0.56
SVM RNA-class probability 0.782477
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2961751 93 + 23771897
UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUCGUGGCUCGUGGCUGAUCAUAAAUUAA
..((((...(((((.....)))))))))((((......(..(((((.....)))))..).(((((.((.....)))))))))))......... ( -30.30)
>DroSec_CAF1 190372 93 + 1
UUGCUGUCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUCCUGGCCAUCGUGGCUCGUGGCUGCUCAUAAAUUAA
((((((...(((((.....))))))))))).......(((((((((.....)))))....(((((.((.....)))))))...))))...... ( -26.10)
>DroSim_CAF1 176504 93 + 1
UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUAAAUUAUGCUGCUGGCCAUCGUGGCUCGUGGCUGGUCAUAAAUUAA
((((((...(((((.....))))))))))).......(((((((((.....))))).((..((((.((.....))))))..))))))...... ( -30.10)
>DroEre_CAF1 198450 90 + 1
UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUUCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC---GCUCUUGGCUGGUCAUAAAUUAA
..((((((.(((((.....))))).((((((.(((...(..(((((.....)))))..).))).)))---)))...))).))).......... ( -29.70)
>DroYak_CAF1 202781 90 + 1
UUGCUGCCUGGGAAAAGGAUUCCCCGGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC---GCUCGUGGCUGGUCAUAAAUUAA
.....(((.(((((.....))))).)))((((......(..(((((.....)))))..).((((((.---....))))))))))......... ( -30.90)
>DroAna_CAF1 175978 83 + 1
UUGUUGCCUUCGA-------CCCCAAAUGCCUGUUCCUGUGGCAUAUUAAUUAUGCUGCCGGCCAUC---GCUCGUGGCUGGCCAUAAAUUAA
..((((....)))-------).....(((((.........))))).....(((((..(((((((((.---....))))))))))))))..... ( -24.70)
>consensus
UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC___GCUCGUGGCUGGUCAUAAAUUAA
..((((...(((((.....)))))))))((((......(..(((((.....)))))..).((((((........))))))))))......... (-24.07 = -24.50 +   0.43) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:16 2006