Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,961,751 – 2,961,844 |
Length | 93 |
Max. P | 0.782477 |
Location | 2,961,751 – 2,961,844 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 88.74 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -24.07 |
Energy contribution | -24.50 |
Covariance contribution | 0.43 |
Combinations/Pair | 1.20 |
Mean z-score | -2.02 |
Structure conservation index | 0.84 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2961751 93 + 23771897 UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUCGUGGCUCGUGGCUGAUCAUAAAUUAA ..((((...(((((.....)))))))))((((......(..(((((.....)))))..).(((((.((.....)))))))))))......... ( -30.30) >DroSec_CAF1 190372 93 + 1 UUGCUGUCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUCCUGGCCAUCGUGGCUCGUGGCUGCUCAUAAAUUAA ((((((...(((((.....))))))))))).......(((((((((.....)))))....(((((.((.....)))))))...))))...... ( -26.10) >DroSim_CAF1 176504 93 + 1 UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUAAAUUAUGCUGCUGGCCAUCGUGGCUCGUGGCUGGUCAUAAAUUAA ((((((...(((((.....))))))))))).......(((((((((.....))))).((..((((.((.....))))))..))))))...... ( -30.10) >DroEre_CAF1 198450 90 + 1 UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUUCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC---GCUCUUGGCUGGUCAUAAAUUAA ..((((((.(((((.....))))).((((((.(((...(..(((((.....)))))..).))).)))---)))...))).))).......... ( -29.70) >DroYak_CAF1 202781 90 + 1 UUGCUGCCUGGGAAAAGGAUUCCCCGGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC---GCUCGUGGCUGGUCAUAAAUUAA .....(((.(((((.....))))).)))((((......(..(((((.....)))))..).((((((.---....))))))))))......... ( -30.90) >DroAna_CAF1 175978 83 + 1 UUGUUGCCUUCGA-------CCCCAAAUGCCUGUUCCUGUGGCAUAUUAAUUAUGCUGCCGGCCAUC---GCUCGUGGCUGGCCAUAAAUUAA ..((((....)))-------).....(((((.........))))).....(((((..(((((((((.---....))))))))))))))..... ( -24.70) >consensus UUGCUGCCUGGGAAAAGGAUUCCCCAGCGAUUGUUCCUGUGGCAUAUUAAUUAUGCUGCUGGCCAUC___GCUCGUGGCUGGUCAUAAAUUAA ..((((...(((((.....)))))))))((((......(..(((((.....)))))..).((((((........))))))))))......... (-24.07 = -24.50 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:16 2006