Locus 989

Sequence ID 3L_DroMel_CAF1
Location 2,958,226 – 2,958,326
Length 100
Max. P 0.624861
window1527

overview

Window 7

Location 2,958,226 – 2,958,326
Length 100
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -30.52
Consensus MFE -19.48
Energy contribution -21.15
Covariance contribution 1.67
Combinations/Pair 1.23
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value 0.19
SVM RNA-class probability 0.624861
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2958226 100 - 23771897
GGGAAAACGGGAGUUGCAGAGG--------GCGGCAGCCAAAGAAGGAAUGGCGAAGGAGAUG----------GAUCCUGCAGCUUAGCGUUAAUUCCCAUGGAACUCAAACGAAUGU
(((((((((.(((((((....(--------((....)))................((((....----------..)))))))))))..))))..)))))................... ( -29.80)
>DroPse_CAF1 192907 99 - 1
GGGAU---G-GGGGGGCGUGGG--------GGGGUGG------G-GGGUUGGAAAUGGAGAUGGAAACGCGCGGCUCCUGCAGCUUAGCGUUAAUUCCCAUGGAACUCAAGCGGAUGU
(((((---(-((((.((((...--------(((.(((------(-((((((........(.((....))).)))))))).)).))).))))...)))))))....))).......... ( -27.90)
>DroSec_CAF1 186844 108 - 1
GGGAAAACGGGAGCUACAGAGG--------GCGGCAGCCGAAGAAGGAAUGGCGAAGGAGCUGGAAACG--AGGAUCCUGCAGCUUAGCGUUAAUUCCCAUGGAACUCAAACGAAUGU
(((((((((.(((((......(--------((....)))...(.((((..(((......)))(....).--....)))).))))))..))))..)))))................... ( -30.30)
>DroSim_CAF1 172987 108 - 1
GGGAAAACGGGAGCUGCAAAGG--------GCGGCAGCCGAAGAAGGAAUGGCGAAGGAGAUGGAAACG--AGGAUCCUGCAGCUUAGCGUUAAUUCCCAUGGAACUCAAACGAAUGU
(((((((((.(((((((.....--------.((.((.((......))..)).)).((((..((....))--....)))))))))))..))))..)))))................... ( -34.90)
>DroEre_CAF1 194867 108 - 1
GGGAAAAUGGGGGCUACAGAAG--------GCGAUGGCCGAAGAAAGAAUGGCGAAGGAGAUGGAAACG--ACGAUCCUGCAGCUUAGCGUUAAUUCCCAUGAAACUCGAACGAAUGU
(((...(((((((..((....(--------((....))).......(...(((..((((..((....))--....))))...)))...)))...)))))))....))).......... ( -27.40)
>DroYak_CAF1 196565 116 - 1
GGAAAAACGGGAGCUGCAGAAGUGGGAGCUGCGGUGGCCGAAGAAAAAAUGGCGAAGGAGAUGGAAACG--AGGAUUCUGCAGCUUAGCGUUAAUUCCCUUGAAACUCGAACGGAUGU
((((.((((.(((((((((((.......((.(..(.((((.........)))).).).)).((....))--....)))))))))))..))))..)))).................... ( -32.80)
>consensus
GGGAAAACGGGAGCUGCAGAGG________GCGGCAGCCGAAGAAGGAAUGGCGAAGGAGAUGGAAACG__AGGAUCCUGCAGCUUAGCGUUAAUUCCCAUGGAACUCAAACGAAUGU
(((((((((.((((((((..................((((.........))))...(((..((....))......)))))))))))..))))..)))))................... (-19.48 = -21.15 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:13 2006