Locus 987

Sequence ID 3L_DroMel_CAF1
Location 2,946,235 – 2,946,329
Length 94
Max. P 0.636373
window1524

overview

Window 4

Location 2,946,235 – 2,946,329
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -27.08
Consensus MFE -19.26
Energy contribution -18.52
Covariance contribution -0.75
Combinations/Pair 1.42
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.21
SVM RNA-class probability 0.636373
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2946235 94 + 23771897
AUAAAUACUUUUUUCUCAGGUGCCGUUAGCUUUGAUGGAGUCUUUAUUGUCCUGUGCCUUCAUAGCGUGGGACUUAUGAGGUCACUUAACCAAA
..................(((.((((((....)))))).(.((((((.((((..(((.......)))..))))..)))))).).....)))... ( -24.80)
>DroSec_CAF1 182242 94 + 1
AUAAAUACUUUUUGCUCAGGUGCCGUUAGCUUUGAUGGAGUCUUUAUUGUCCUAUGCCUUCAUAGCGUGGGACUUAUGAGGUCCCUCAACCAAA
..................(((((.....))..(((.((.(.((((((.(((((((((.......)))))))))..)))))).)))))))))... ( -26.50)
>DroSim_CAF1 168385 93 + 1
AUAAAUACUUUUU-CUCAGGUGCCGUUAGCUUUGAUGGAGUCUUUAUUGUCCUAUGCCUUCAUAGCGUGGGACUUGUGAGGUCCCUCAACCAAA
.............-....(((((.....))..(((.((.(.((((((.(((((((((.......)))))))))..)))))).)))))))))... ( -26.80)
>DroEre_CAF1 190307 93 + 1
AUUGAUAUUUC-UGAUCAGGUGCCGUCAGCUUUGAUGGAGUCUUUAUUGUUCUGUGCCUUCAUAGCGUGGGACUAAUGAAGUCCCUCAACCAGA
.........((-((...(((..(((((......))))).(.(((((((((((..(((.......)))..)))).))))))).))))....)))) ( -26.10)
>DroYak_CAF1 191920 93 + 1
AUUUAUAUUUC-UGUUCAGGCGCCGUUAGCUUUGAUGGAAUCUUUAUUGUUCUCUGUCUUCAUAGCGUGGGGCUAAUGAAGUCCCUCAACCAGA
.........((-((....(((.......)))((((.(((..((((((((((((.((.((....)))).))))).)))))))))).)))).)))) ( -20.00)
>DroPer_CAF1 185468 93 + 1
UGAUUUACUGU-UACGCAGGCGCCGUCAGCUUCGAUGGCGUCUUCAUUGUCGUGUGCCUCCACGGCGUGGGUCUGAUGGAGUCGCUCGGCGAGA
...........-...(.((((((((((......)))))))))).).((((((.(((.(((((((((....).))).))))).))).)))))).. ( -38.30)
>consensus
AUAAAUACUUU_UGCUCAGGUGCCGUUAGCUUUGAUGGAGUCUUUAUUGUCCUGUGCCUUCAUAGCGUGGGACUUAUGAAGUCCCUCAACCAAA
..................(((.(((((......))))).(.((((((.(((((((((.......)))))))))..)))))).).....)))... (-19.26 = -18.52 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:10 2006