Locus 986

Sequence ID 3L_DroMel_CAF1
Location 2,942,463 – 2,942,557
Length 94
Max. P 0.530581
window1523

overview

Window 3

Location 2,942,463 – 2,942,557
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 98.72
Mean single sequence MFE -29.98
Consensus MFE -28.70
Energy contribution -28.86
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.20
Structure conservation index 0.96
SVM decision value -0.01
SVM RNA-class probability 0.530581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2942463 94 - 23771897
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUUGGGAUG
....(((.....))).(((((..(((.(((((((((...((..((....)).....(......)))..))))))......))).)))..))))) ( -30.10)
>DroSec_CAF1 178466 94 - 1
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUUGGGAUG
....(((.....))).(((((..(((.(((((((((...((..((....)).....(......)))..))))))......))).)))..))))) ( -30.10)
>DroSim_CAF1 164603 94 - 1
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUUGGGAUG
....(((.....))).(((((..(((.(((((((((...((..((....)).....(......)))..))))))......))).)))..))))) ( -30.10)
>DroEre_CAF1 186492 94 - 1
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUCGGGAUA
....(((.....)))..(((((((((.(((((((((...((..((....)).....(......)))..))))))......))).))))))))). ( -29.80)
>DroYak_CAF1 188023 94 - 1
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUCGGGAUA
....(((.....)))..(((((((((.(((((((((...((..((....)).....(......)))..))))))......))).))))))))). ( -29.80)
>consensus
CUAAGAGGCUAACUCGCAUCCUGGCUCAUCGCUGGCCGAGCAGAGGCAACUAAACAGGACAAACGCAAGCCAGUUGGACAGAUCGGUUGGGAUG
....(((.....))).((((((((((.(((((((((...((..((....)).....(......)))..))))))......))).)))))))))) (-28.70 = -28.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:09 2006