| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,939,411 – 2,939,521 |
| Length | 110 |
| Max. P | 0.938732 |
| Location | 2,939,411 – 2,939,521 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.40 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -27.74 |
| Energy contribution | -27.43 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2939411 110 - 23771897 UGGAGCGCCGGUGGUGCUCCAGAUUGGGCGAGGCGUCAAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCGAACUUGGCUGUGG-GUC------GAGUUUUGAUUAGUUUGAUAGAU (((((((((...)))))))))....(((((((.((((.(((((.....)))))...).))))))))))(((((((((((.....-)))------))).))))).............. ( -41.30) >DroVir_CAF1 220320 103 - 1 UGGAGCGUCUGUGAUGCUCCAGAUUCGGCGAUGCAUCAAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCAAAUUUGGCUGAAA-GUA------AAC-----AGCAGUU--AGUCAA (((((((((...)))))))))((...(((((.(((((.(((((.....)))))...).))))))))).))....((((((((..-((.------...-----.))..))--)))))) ( -35.30) >DroWil_CAF1 171056 99 - 1 UGGAGCGUCUGUGGUGUUCCAAAUUGGGCGAGGCAUCAAUCGAGUCAAUCGAUGAGGAAUGUUUGCUCUCGAAUUUGGCUGUAA-UCA------UA-------AAACUG--AGGC-- ....((.((((((((...((((((((((((((.((((.(((((.....)))))...).))))))))))...))))))).....)-)))------))-------.....)--).))-- ( -25.90) >DroYak_CAF1 184994 94 - 1 UGGAGCGCCGAUGGUGCUCCAGAUUGGGCGAGGCGUCAAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCGAACUUGGCUGUGG-A----------------------UCGAUUGAU (((((((((...)))))))))....(((((((.((((.(((((.....)))))...).))))))))))((((.((.......))-.----------------------))))..... ( -35.00) >DroMoj_CAF1 214330 108 - 1 UGGAGCGCCGGUGGUGCUCCAGGUUCGGCGACGCGUCGAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCAAAUUUGGCUGAAG-GAAAUCCCAAAC-----ACCA-UU--AGACAG (((((((((...)))))))))(((((((((((.((.....)).)))....((.(((.(.....).))))).......))))).(-(.....))....-----))).-..--...... ( -33.20) >DroAna_CAF1 161793 103 - 1 UGGAGCGCCGGUGAUGCUCCAGAUUGGGCGAGGCAUCAAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCGAACUUGGCUGUGUUAUA------AAAUAU--------UAUAUAAAU (((((((.......)))))))....(((((((.((((.(((((.....)))))...).))))))))))...(((........)))...------......--------......... ( -26.30) >consensus UGGAGCGCCGGUGGUGCUCCAGAUUGGGCGAGGCAUCAAUCGAGUCUAUCGAUGAGGAAUGCUUGCUCUCGAACUUGGCUGUAG_GUA______AA_________A_UU__AGACAU (((((((((...)))))))))....((((((.(((((.(((((.....)))))...).))))))))))................................................. (-27.74 = -27.43 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:08 2006