| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,928,330 – 2,928,437 |
| Length | 107 |
| Max. P | 0.779296 |
| Location | 2,928,330 – 2,928,437 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Mean single sequence MFE | -21.16 |
| Consensus MFE | -15.26 |
| Energy contribution | -16.08 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2928330 107 - 23771897 UACGCCUUUUGUUU----UUGCAUCUAGCUCUUACACACAAUACAAAGAUAUGAAUGCGGUAAGAGUUAGUUAAAGGAAAUCAGGAAAUAAUGCAUUAAAAAUAUAAA-UAA ....(((...((((----((....(((((((((((.(.((...((......))..)).)))))))))))).....)))))).))).......................-... ( -19.30) >DroSim_CAF1 150597 106 - 1 UACGCCUUUUGUUU----UUGCAUCUAGCUCUUACACACAAUGCAAACAUAUGAAUGCGGUAAGAGUUAGUUAAAGGAAAUCAGGAAACAAUGCAUAA-AAAUAUAAA-UAA .........(((((----(((((((((((((((((.(.((...((......))..)).)))))))))))).............(....).)))))..)-)))))....-... ( -22.60) >DroEre_CAF1 172288 110 - 1 UACGCCUUUUGUUUUGUUUUUCAGCUAGCUCUUACACACAAUACAAACAUAUGAAUGCUGUAAGAGUUAGU-AACAUAAAUCAGGAAAUAAUGCAUCAAAAAUAGAAA-UAA ...((.((...(((((.(((...(((((((((((((((..(((......)))...)).)))))))))))))-.....))).)))))...)).))..............-... ( -22.00) >DroYak_CAF1 173555 108 - 1 UACGCCUUUUGUUU----UUGCAUCUAGCUCUUACACACAAUACAAACAUAUGAAUGCUGUAAGAGUUAGUUAACAUAAAUCAGAAAAUAAUGCAUCAAAAAUGGAAAUUAA ......(((..(((----((((((((((((((((((((..(((......)))...)).))))))))))))....................)))))...))))..)))..... ( -20.75) >consensus UACGCCUUUUGUUU____UUGCAUCUAGCUCUUACACACAAUACAAACAUAUGAAUGCGGUAAGAGUUAGUUAAAAGAAAUCAGGAAAUAAUGCAUCAAAAAUAGAAA_UAA ......((((((((.....((((((((((((((((.....((.((......)).))...)))))))))))....................)))))....))))))))..... (-15.26 = -16.08 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:05 2006