Locus 982

Sequence ID 3L_DroMel_CAF1
Location 2,927,189 – 2,927,280
Length 91
Max. P 0.979798
window1517

overview

Window 7

Location 2,927,189 – 2,927,280
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 97.79
Mean single sequence MFE -23.84
Consensus MFE -19.18
Energy contribution -19.78
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -3.99
Structure conservation index 0.80
SVM decision value 1.85
SVM RNA-class probability 0.979798
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2927189 91 - 23771897
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUAUAUAUAUUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))((((((((((((....)))))))))..))).................... ( -24.80)
>DroSec_CAF1 163264 89 - 1
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUAU--AUAAUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))(((((((((--((....))))))))..))).................... ( -23.20)
>DroSim_CAF1 149456 89 - 1
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUAU--AUAAUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))(((((((((--((....))))))))..))).................... ( -23.20)
>DroEre_CAF1 171126 89 - 1
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUA--UAUAAUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))((((((((--(((....))))))))..))).................... ( -23.20)
>DroYak_CAF1 172353 91 - 1
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUAUAUAUAAUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))((((((((((((....)))))))))..))).................... ( -24.80)
>consensus
AUGAGCAUAUACAUCAUAUGGUUUCAUGUGUGUUUGUGUUCGCUUUAUAU_UAUAAUUGUAUGUAAUCAGCACUUGAAAAUUUUCUAAAAA
..(((((((.(((.((((((....))))))))).)))))))(((((((((.((....)).))))))..))).................... (-19.18 = -19.78 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:03 2006