Locus 980

Sequence ID 3L_DroMel_CAF1
Location 2,925,863 – 2,925,955
Length 92
Max. P 0.582220
window1512

overview

Window 2

Location 2,925,863 – 2,925,955
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 87.43
Mean single sequence MFE -18.12
Consensus MFE -15.10
Energy contribution -15.27
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.83
SVM decision value 0.10
SVM RNA-class probability 0.582220
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2925863 92 + 23771897
UGCUUUUGUACUUAUCGCAUUAAGCGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACAC------ACACCCCGAACC--C-CCGAAACCC-CCUUAAAU
...(((((..((((......))))..)))))((((.(((((((...(((.....))).....------......((....--.-.))))))))-).)))).. ( -17.80)
>DroSec_CAF1 161975 92 + 1
UGCU-UUGUACUUAUCGCAUUAAACGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACAC------ACACCCCGAACC--CCCCAAAACCC-CCUUAAAU
((((-((((((...((((.......))))....(((((.....))))).))))))))))...------............--...........-........ ( -20.30)
>DroSim_CAF1 148116 92 + 1
UGCUUUUGUACUUAUCGCAUUAAGCGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACAC------ACACCCCGAACC--C-CCAAAACCC-CCUUAAAU
...(((((..((((......))))..)))))((((.((((((((..(((.....))).....------.......(....--.-.))))))))-).)))).. ( -16.80)
>DroEre_CAF1 169750 91 + 1
UGCUUUUGUACUUAUCGCAUUAAGCGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACAC------ACACCCCGAACC--C-CCGAAACCC--CGUAAAU
((((((((..((((......))))..))))).....(((((((...(((.....))).....------......((....--.-.))))))))--))))... ( -17.90)
>DroYak_CAF1 170970 99 + 1
UGCUUUUGUACUUAUCGCAUUAAGCGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACACACACACACACCCCGAACC--C-CCGAUACCCUUCCAAAAU
((((((.((((...((((.......))))....(((((.....))))).)))))))))).....................--.-.................. ( -16.50)
>DroAna_CAF1 149073 85 + 1
UGCU-UUGUACUUAGCGCAUUAAACGCGAAAUUAGUGGGGUUUUCACCUGUACAAAGCA------------CCCCUAACCUACCCCACAACCA----CAAAC
((((-((((((...(((.......)))..........((((....))))))))))))))------------......................----..... ( -19.40)
>consensus
UGCUUUUGUACUUAUCGCAUUAAGCGCGAAAUUAGUGGGGUUUUCACUUGUACAAAGCACAC______ACACCCCGAACC__C_CCAAAACCC_CCUUAAAU
((((.((((((...((((.......)))).....((((.....))))..))))))))))........................................... (-15.10 = -15.27 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:59 2006