Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,921,664 – 2,921,758 |
Length | 94 |
Max. P | 0.687524 |
Location | 2,921,664 – 2,921,758 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.88 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -17.22 |
Energy contribution | -17.70 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.75 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2921664 94 - 23771897 --CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---CUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUUGUU --................-...(((((.((((...(((((.((..((((((.((((.....---.)))).))))))...)-)))))).)))).)))))... ( -23.80) >DroSec_CAF1 157757 94 - 1 --CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUAGUU --................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -23.30) >DroEre_CAF1 165567 94 - 1 --CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUAGUU --................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -23.30) >DroYak_CAF1 166651 94 - 1 --AUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGUAUACUGUAGUU --................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -21.30) >DroAna_CAF1 144522 100 - 1 UUUUUUUUUUGCUUUUGUUUUGAACAGAAUGCAUUGGAGGGAUGUUUCGUAAACAAAAAAGGAUUGUGUGUGCGAGUUAUUCACUUUGGCAUACU-UGCUU .........(((((((((.....)))))).)))..(((((((((.((((((.((((.......))))...)))))).))))).))))((((....-)))). ( -22.40) >consensus __CUUAUUUCGCUUUCGA_UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG___UUUGUGUGCGAAUUAU_CACUUUGGCAUACUGUAGUU .......................((((.((((...(((((.....((((((.(((((.......))))).))))))......))))).)))).)))).... (-17.22 = -17.70 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:54 2006