| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,909,454 – 2,909,544 |
| Length | 90 |
| Max. P | 0.964975 |
| Location | 2,909,454 – 2,909,544 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.98 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -11.96 |
| Energy contribution | -13.30 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2909454 90 + 23771897 -UCACUAUUAUUUUUACACUAUCG----------------CCAGCUCUUGCACUUUGUAAU--AUA-----ACUCAGCCGUCGAGCAGAUCUGAGUACUAAAUAGUGUAAGGAU -........(((((((((((((..----------------...((....))..........--...-----((((((..(((.....))))))))).....))))))))))))) ( -21.90) >DroGri_CAF1 176930 102 + 1 CAGAAUAUUAUUUUUACACUAUCGUAUUGCAUUUAGCUCGGCAUUCGCAGCACUUUGUAAU--AUA----AAUUUCACUGCCAAGCAAAACGA------AAAUAGUGUAAAAAU .........(((((((((((((.((((((((....(((((.....)).)))....))))))--)).----..((((..(((...)))....))------))))))))))))))) ( -23.50) >DroSec_CAF1 153805 90 + 1 -UCACUAUUAUUUUUACACUAUCG----------------CCAGCUCUUGCACUUUGUAAU--AUA-----ACUCAGCCGUCGAGCAGAUCUGAGUACUAAAUAGUGUAAGGAU -........(((((((((((((..----------------...((....))..........--...-----((((((..(((.....))))))))).....))))))))))))) ( -21.90) >DroEre_CAF1 161114 90 + 1 -UCACUAUUAUUUUUACACUAUCG----------------CCAGCUCUUGCACUUUGUAAU--AUA-----ACUCAGCCGUCGAGCAGAUCUGAGUACUAUAUAGUGUAAGGAU -........(((((((((((((..----------------...((....))..........--...-----((((((..(((.....))))))))).....))))))))))))) ( -21.80) >DroYak_CAF1 162627 92 + 1 -UCACUAUUAUUUUUACACUAUCG----------------CCAGCUCUUGCACUUUGUAAUAUAUA-----ACUCAGCCGUCGAGCAGAUCUGAGUACUAUAUAGUGUAAGGAU -........(((((((((((((..----------------...((....))...............-----((((((..(((.....))))))))).....))))))))))))) ( -21.80) >DroAna_CAF1 140380 87 + 1 -UCACUAUUAUUUGUACACUAUCG----------------CCAAGUUUCUCACUGUGUAAA--AUAUGAACAUAUGGCCGUCGAGCAGAUCAGAGU-----AUAGUAUAAG--- -......((((((((((.((((((----------------(((.((...(((.(((.....--))))))..)).)))).(.....).))).)).))-----)))).)))).--- ( -12.40) >consensus _UCACUAUUAUUUUUACACUAUCG________________CCAGCUCUUGCACUUUGUAAU__AUA_____ACUCAGCCGUCGAGCAGAUCUGAGUACUAAAUAGUGUAAGGAU .........(((((((((((((.....................((....))....................((((((..(((.....))))))))).....))))))))))))) (-11.96 = -13.30 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:53 2006