Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,905,236 – 2,905,331 |
Length | 95 |
Max. P | 0.767194 |
Location | 2,905,236 – 2,905,331 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 84.48 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -23.38 |
Energy contribution | -24.85 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.11 |
Mean z-score | -3.20 |
Structure conservation index | 0.69 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2905236 95 + 23771897 ----GGCGGGUGUGUGCUGCCAUAAAUUUCAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGCCAAAAGAAAUGGCUUUCGCCCUC-- ----((((((((((.(((((...........))))))))..(((((((..(((.....)))..))))))).))(((((.......))))).)))))...-- ( -36.40) >DroSec_CAF1 149648 93 + 1 ------UGGGCUGGUGCUGCAAUAAAUUUCAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGCCAAAAGAAAUGGCUUUCGCCCUC-- ------.((((((((((((.((.....))))))).)))...(((((((..(((.....)))..)))))))...(((((.......)))))...))))..-- ( -37.20) >DroSim_CAF1 140827 95 + 1 ----GGCGGGUGGGUGCUGCCAUAAAUUUCAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGCCAAAAGAAAUGGCUUUCGCCCUC-- ----(((((((((.(((((..........))))).))))).(((((((..(((.....)))..)))))))...(((((.......)))))..))))...-- ( -39.70) >DroEre_CAF1 157010 92 + 1 -------GAGUGGGCGCUGCCAUAAAUUUUAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGUCAAAAGAAAUGGCUUUCGCCCUC-- -------....(((((..(((((...((((..(.((.....(((((((..(((.....)))..))))))).)).)..))))...)))))...)))))..-- ( -35.90) >DroYak_CAF1 158307 101 + 1 CUUAGAUGAGUGGGUGCUGCCAUAAAUUUCAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGUCAAAAGAAAUGGCUUUCGUCCUCCC ....(((((((((.(((((..........))))).))))..(((((((..(((.....)))..)))))))...(((((.......))))).)))))..... ( -33.60) >DroAna_CAF1 136085 80 + 1 ----G--GCGUGGGCG-UGUCAUAAAUUUUAGCAGCCAUUAUCUGACAGUGUUUUUAUGACAAGGCCAGAAGCAGUCU-----------CUGCGUCCU--- ----(--((.(((.(.-(((((((((......(((.......)))........))))))))).).)))...((((...-----------)))))))..--- ( -21.94) >consensus ____G__GGGUGGGUGCUGCCAUAAAUUUCAGCAGCCAUUAUCUGGCCGAGUUUUUAUGACAAGGCCAGAAGCAGCCAAAAGAAAUGGCUUUCGCCCUC__ ...........(((((..(((((...(((..((.((.....(((((((..(((.....)))..))))))).)).))..)))...)))))...))))).... (-23.38 = -24.85 + 1.47)
Location | 2,905,236 – 2,905,331 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 84.48 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -21.88 |
Energy contribution | -22.72 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.17 |
Mean z-score | -3.26 |
Structure conservation index | 0.67 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2905236 95 - 23771897 --GAGGGCGAAAGCCAUUUCUUUUGGCUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUGAAAUUUAUGGCAGCACACACCCGCC---- --..(((.(..(((((.......)))))...(((((((..((.......))..)))))))...((((((((.........)))))).))).)))...---- ( -34.30) >DroSec_CAF1 149648 93 - 1 --GAGGGCGAAAGCCAUUUCUUUUGGCUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUGAAAUUUAUUGCAGCACCAGCCCA------ --..((((...(((((.......)))))...(((((((..((.......))..)))))))...(((.(((((..........)))))))))))).------ ( -37.20) >DroSim_CAF1 140827 95 - 1 --GAGGGCGAAAGCCAUUUCUUUUGGCUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUGAAAUUUAUGGCAGCACCCACCCGCC---- --..(((.(...(((((...(((..((.((((((((((..((.......))..)))))))....))).))..)))...)))))..).))).......---- ( -36.70) >DroEre_CAF1 157010 92 - 1 --GAGGGCGAAAGCCAUUUCUUUUGACUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUAAAAUUUAUGGCAGCGCCCACUC------- --..(((((...(((((...(((((.(.((((((((((..((.......))..)))))))....))).).)))))...)))))..)))))....------- ( -36.00) >DroYak_CAF1 158307 101 - 1 GGGAGGACGAAAGCCAUUUCUUUUGACUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUGAAAUUUAUGGCAGCACCCACUCAUCUAAG (((.((.(....)))................(((((((..((.......))..))))))).....((((((.........)))))).)))........... ( -31.30) >DroAna_CAF1 136085 80 - 1 ---AGGACGCAG-----------AGACUGCUUCUGGCCUUGUCAUAAAAACACUGUCAGAUAAUGGCUGCUAAAAUUUAUGACA-CGCCCACGC--C---- ---.(((.((((-----------...)))).)))(((..(((((((((......((((.....))))........)))))))))-.))).....--.---- ( -21.04) >consensus __GAGGGCGAAAGCCAUUUCUUUUGACUGCUUCUGGCCUUGUCAUAAAAACUCGGCCAGAUAAUGGCUGCUGAAAUUUAUGGCAGCACCCACCC__C____ .....(((....))).........((.((..(((((((..((.......))..))))))).....(((((((.......)))))))...)).))....... (-21.88 = -22.72 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:50 2006