Locus 974

Sequence ID 3L_DroMel_CAF1
Location 2,903,642 – 2,903,737
Length 95
Max. P 0.996058
window1501

overview

Window 1

Location 2,903,642 – 2,903,737
Length 95
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 64.51
Mean single sequence MFE -37.60
Consensus MFE -19.25
Energy contribution -19.25
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.51
SVM decision value 2.65
SVM RNA-class probability 0.996058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2903642 95 - 23771897
--UUCCCCGAACUUUUCGG---GGCUUUC-UUUUGCGUGCCAC-GGCGACUUAUUGGCCAUUGGCAUGCAAG--CUGAUU-------CUACUGCUGCUGCUGCU-------GCUCUGC
--..((((((.....))))---))...((-.(((((((((((.-(((.(.....).)))..)))))))))))--..))..-------.....((.((....)).-------))..... ( -34.50)
>DroPse_CAF1 166107 115 - 1
--CGGCUCACAGUUUUUGGCUGUGGUCCG-UUUUGCGUGCCAAAUGCGACUUAUUGGCCAUUGGCAUGCAAGGGCCGACUGGCAGGGCUGCUGCUGCCGCUGCUGCUUCCUUCACUGC
--(((((((((((.....)))))).....-.((((((((((((..((.(.....).))..)))))))))))))))))...((((((((.......))).))))).............. ( -45.90)
>DroAna_CAF1 134489 78 - 1
CUUUCUCCUACGUUUUCGG---GGCUUUCAUUUUGCGUGCCAC-AGCGACUUAUUGGCCAUUGGCAUGCAAG--CUGCUU-------C---------------------------UUC
.................((---(((......(((((((((((.-.((.(.....).))...)))))))))))--..))))-------)---------------------------... ( -21.40)
>DroPer_CAF1 158990 115 - 1
--CGGCUCACAGUUUUUGGCUGUGGUCCG-UUUUGCGUGCCAAAUGCGACUUAUUGGCCAUUGGCAUGCAAGGGCCGACUGGCAGGGCUGCUGCUGCCGCUCCUGCUUCUUUCACUGC
--(((((((((((.....)))))).....-.((((((((((((..((.(.....).))..)))))))))))))))))...((((((((.((....)).)).))))))........... ( -48.60)
>consensus
__CGCCCCAAAGUUUUCGG___GGCUCCC_UUUUGCGUGCCAA_UGCGACUUAUUGGCCAUUGGCAUGCAAG__CCGACU_______CUGCUGCUGCCGCUGCU_______UCACUGC
...............((((((..........(((((((((((...((.(.....).))...)))))))))))))))))........................................ (-19.25 = -19.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:48 2006