Locus 972

Sequence ID 3L_DroMel_CAF1
Location 2,897,226 – 2,897,333
Length 107
Max. P 0.548187
window1497

overview

Window 7

Location 2,897,226 – 2,897,333
Length 107
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.88
Mean single sequence MFE -31.52
Consensus MFE -21.70
Energy contribution -22.37
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.69
SVM decision value 0.03
SVM RNA-class probability 0.548187
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2897226 107 + 23771897
CCCAUCGCCUAUAG-------CC-CACCAACCACCC---ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGAGCACG
....((((((....-------..-............---..((((..((((((........)))))).)))).(((((((.((((......)))).)))))))....))))))..... ( -34.50)
>DroSec_CAF1 141686 99 + 1
CCCAUCGCCUAUAG-------CC-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUCGCGUCUGUCCUUGCCGUAGAGCGAAGGCAGGCACAAAGGCGAGCACG
....((((((....-------..-....-----------....(((.((((........)))).)))....(.(((((((.((((......)))).))))))).)..))))))..... ( -29.70)
>DroSim_CAF1 132853 99 + 1
CCCAUCGCCUAUAG-------CC-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUAGAGCGAAGGCAGGCACAAAGGCGAGCACG
....((((((....-------..-..((-----------((..(((.((((........)))).))).)))).(((((((.((((......)))).)))))))....))))))..... ( -34.60)
>DroEre_CAF1 148916 98 + 1
C-CACCACCCACUA-------CA-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGACCACG
.-............-------..-....-----------....(((.((((........)))).)))((((((((((((.((((((..........)))))).))..))))).))))) ( -27.60)
>DroYak_CAF1 150086 106 + 1
CACACCACCCACCGAACACCGCC-CACC-----------ACCCACCAACUUACAACCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGCGGAGCGAAGGCAGGCACAAAGGCGAGCACG
...................((((-..((-----------((..(((.((((........)))).))).)))).(((((((.((((......)))).))))))).....))))...... ( -31.40)
>DroAna_CAF1 130159 100 + 1
------UCCUGUCC-------CCCUACC----UCCCUCGUGCCCCUAAC-UACCGGGCAAAGUAGGUCGUCGCGUCUGUCCUUGCAGAGGAGCGAAGGCAGGCACAAAGGCGAACCCG
------........-------.(((((.----.......(((((.....-....)))))..)))))(((((..(((((((.((((......)))).))))))).....)))))..... ( -31.30)
>consensus
CCCAUCGCCUAUAG_______CC_CACC___________ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGAGCACG
.......((................................((((..((((((........)))))).)))).(((((((.((((......)))).))))))).....))........ (-21.70 = -22.37 +   0.67) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:44 2006