Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,897,226 – 2,897,333 |
Length | 107 |
Max. P | 0.548187 |
Location | 2,897,226 – 2,897,333 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -21.70 |
Energy contribution | -22.37 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.69 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2897226 107 + 23771897 CCCAUCGCCUAUAG-------CC-CACCAACCACCC---ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGAGCACG ....((((((....-------..-............---..((((..((((((........)))))).)))).(((((((.((((......)))).)))))))....))))))..... ( -34.50) >DroSec_CAF1 141686 99 + 1 CCCAUCGCCUAUAG-------CC-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUCGCGUCUGUCCUUGCCGUAGAGCGAAGGCAGGCACAAAGGCGAGCACG ....((((((....-------..-....-----------....(((.((((........)))).)))....(.(((((((.((((......)))).))))))).)..))))))..... ( -29.70) >DroSim_CAF1 132853 99 + 1 CCCAUCGCCUAUAG-------CC-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUAGAGCGAAGGCAGGCACAAAGGCGAGCACG ....((((((....-------..-..((-----------((..(((.((((........)))).))).)))).(((((((.((((......)))).)))))))....))))))..... ( -34.60) >DroEre_CAF1 148916 98 + 1 C-CACCACCCACUA-------CA-CACC-----------ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGACCACG .-............-------..-....-----------....(((.((((........)))).)))((((((((((((.((((((..........)))))).))..))))).))))) ( -27.60) >DroYak_CAF1 150086 106 + 1 CACACCACCCACCGAACACCGCC-CACC-----------ACCCACCAACUUACAACCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGCGGAGCGAAGGCAGGCACAAAGGCGAGCACG ...................((((-..((-----------((..(((.((((........)))).))).)))).(((((((.((((......)))).))))))).....))))...... ( -31.40) >DroAna_CAF1 130159 100 + 1 ------UCCUGUCC-------CCCUACC----UCCCUCGUGCCCCUAAC-UACCGGGCAAAGUAGGUCGUCGCGUCUGUCCUUGCAGAGGAGCGAAGGCAGGCACAAAGGCGAACCCG ------........-------.(((((.----.......(((((.....-....)))))..)))))(((((..(((((((.((((......)))).))))))).....)))))..... ( -31.30) >consensus CCCAUCGCCUAUAG_______CC_CACC___________ACCCACCAACUUACAUCCCAAAGUAGGUCGUGGCGUCUGUCCUUGCCGUGGAGCGAAGGCAGGCACAAAGGCGAGCACG .......((................................((((..((((((........)))))).)))).(((((((.((((......)))).))))))).....))........ (-21.70 = -22.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:44 2006