Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,891,138 – 2,891,287 |
Length | 149 |
Max. P | 0.984105 |
Location | 2,891,138 – 2,891,255 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 95.38 |
Mean single sequence MFE | -40.16 |
Consensus MFE | -35.00 |
Energy contribution | -35.68 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.87 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2891138 117 + 23771897 GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCCGCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCACACCUCGCUAAAAUGUGCACAGUGUGCAAGUGCGCACAG ........((((((((((((((.......((.((((.((((....)))).)))).)).......((((.(........).))))))))))))).)))))((((((....)))))).. ( -43.30) >DroSec_CAF1 135691 117 + 1 GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCACCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUAGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAG ......((((((((((((((((.......(((.((((...((((((.....))))))....)))).)))(....).........))))))))).)))))))(((((....))))).. ( -42.80) >DroSim_CAF1 126296 117 + 1 GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCCGCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUCGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAG ......((((((((((((((((.......((.((((.((((....)))).)))).))....(.((..((((....)))).)).)))))))))).)))))))(((((....))))).. ( -41.30) >DroEre_CAF1 142712 116 + 1 GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCCGCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUAGCACCUCGCUAA-AUGUGCACUCUGUGCAAGUGUGCACCG ((((((...((((..((((.((((((...((.((((.((((....)))).)))).)))))))).)))).(....)..))))....))))-))((((((.((.....)).)))))).. ( -36.70) >DroYak_CAF1 143815 116 + 1 GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCCGCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUAGCACCUCGCUAA-GUGUGCACUGUGUGUAAGUGUGCACAG ..((((...((((..((((.((((((...((.((((.((((....)))).)))).)))))))).)))).(....)..))))....))))-(((..((((.......))))..))).. ( -36.70) >consensus GUUUAGAUUGUGUCAUUUUGGUAAUUUUGGCCCGCGCUGCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUCGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAG ......((((((((((((((((.......(((..(((...((((((.....))))))....)))..)))(....).........))))))))).)))))))((((......)))).. (-35.00 = -35.68 + 0.68)
Location | 2,891,138 – 2,891,255 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 95.38 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -27.60 |
Energy contribution | -28.32 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.84 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2891138 117 - 23771897 CUGUGCGCACUUGCACACUGUGCACAUUUUAGCGAGGUGUGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGCGGGCCAAAAUUACCAAAAUGACACAAUCUAAAC (((((((((.((((.......((........))((((((.(.....))))))).)))).)))......((((....))))))))))............................... ( -33.50) >DroSec_CAF1 135691 117 - 1 CUGUGCACACUUGCACACUGUGCACAUUUUAGCUAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGGUGGCCAAAAUUACCAAAAUGACACAAUCUAAAC .((((((.((((((((.(((.((........)))))))))))))....(((.((((...((....)).((((....)))))))).)))..............)).))))........ ( -36.10) >DroSim_CAF1 126296 117 - 1 CUGUGCACACUUGCACACUGUGCACAUUUUAGCGAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGCGGGCCAAAAUUACCAAAAUGACACAAUCUAAAC .((((((.((((((((.((.(((........)))))))))))))....((((.(((...((....)).((((....))))))).))))..............)).))))........ ( -33.10) >DroEre_CAF1 142712 116 - 1 CGGUGCACACUUGCACAGAGUGCACAU-UUAGCGAGGUGCUAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGCGGGCCAAAAUUACCAAAAUGACACAAUCUAAAC .(((((((.(((((...((((....))-)).))))))))).(((((..((((.(((...((....)).((((....))))))).))))..))))))))................... ( -31.20) >DroYak_CAF1 143815 116 - 1 CUGUGCACACUUACACACAGUGCACAC-UUAGCGAGGUGCUAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGCGGGCCAAAAUUACCAAAAUGACACAAUCUAAAC ((((((.............(((((...-...((((((((........))))).)))...)))))....((((....))))))))))............................... ( -30.00) >consensus CUGUGCACACUUGCACACUGUGCACAUUUUAGCGAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGCAGCGCGGGCCAAAAUUACCAAAAUGACACAAUCUAAAC ..(((((.((((((((....(((........)))..))))))))....((((.(((...((....)).((((....))))))).))))..............)).)))......... (-27.60 = -28.32 + 0.72)
Location | 2,891,176 – 2,891,287 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 86.73 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -25.76 |
Energy contribution | -25.84 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -2.36 |
Structure conservation index | 0.83 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2891176 111 + 23771897 GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCACACCUCGCUAAAAUGUGCACAGUGUGCAAGUGCGCACAGAAAGAAAAGGU--UGGAAUAUAACUAAUAAUAGU (((....)))..((((..((...(((.(((.(........).)))))).....))..))))((((((....))))))..........(((--((.....)))))......... ( -33.20) >DroSec_CAF1 135729 111 + 1 GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUAGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAGAAAGAAAAGGU--UGGAAUAUAACUAAUAAUAGU ((((...((((((.......))))))...))(....)..))((((..((....((((((((.(.....).))))))))...))...))))--.........((((....)))) ( -30.40) >DroSim_CAF1 126334 111 + 1 GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUCGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAGAAAGAAAAGGU--UGGAAUAUAACUAAUAAUAGU (((....)))..((((..((...(((..(((((....)))).)..))).....))..))))(((..(....)..)))..........(((--((.....)))))......... ( -32.80) >DroEre_CAF1 142750 97 + 1 GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUAGCACCUCGCUAA-AUGUGCACUCUGUGCAAGUGUGCACCGAAAGAAAUAGGAUAGAUAU--------------- (((....)))...(((..((.(((((((((((....)((((.....)))).-....)).))))..)))).))..)))(....)...............--------------- ( -29.30) >DroYak_CAF1 143853 112 + 1 GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUAGCACCUCGCUAA-GUGUGCACUGUGUGUAAGUGUGCACAGAAAGAAAUAGUAGUGAAAUAUAACUAAUAAUAGU ((((...((((((.......))))))...))(....)..))...((((((.-(((..((((.......))))..)))....(....)..))))))......((((....)))) ( -30.20) >consensus GCGUAUACGCAAUGUGUGCAAUUGCGGAGGCGGAAACUCGCACCUCGCUAAAAUGUGCACAGUGUGCAAGUGUGCACAGAAAGAAAAGGU__UGGAAUAUAACUAAUAAUAGU (((....)))..((((((((.(((((((((.(........).))))((........))......))))).))))))))................................... (-25.76 = -25.84 + 0.08)
Location | 2,891,176 – 2,891,287 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.73 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -21.82 |
Energy contribution | -22.06 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.10 |
Structure conservation index | 0.85 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2891176 111 - 23771897 ACUAUUAUUAGUUAUAUUCCA--ACCUUUUCUUUCUGUGCGCACUUGCACACUGUGCACAUUUUAGCGAGGUGUGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ((((....)))).........--............((((.(((.((((.......((........))((((((.(.....))))))).)))).))).))))..(((....))) ( -27.20) >DroSec_CAF1 135729 111 - 1 ACUAUUAUUAGUUAUAUUCCA--ACCUUUUCUUUCUGUGCACACUUGCACACUGUGCACAUUUUAGCUAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ((((....)))).........--............((((((.((((((((.(((.((........)))))))))))))....((....))...))))))....(((....))) ( -25.90) >DroSim_CAF1 126334 111 - 1 ACUAUUAUUAGUUAUAUUCCA--ACCUUUUCUUUCUGUGCACACUUGCACACUGUGCACAUUUUAGCGAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ((((....)))).........--............((((((....)))))).((((((.(((...((((((((.(.....)))))).))))))))))))....(((....))) ( -26.50) >DroEre_CAF1 142750 97 - 1 ---------------AUAUCUAUCCUAUUUCUUUCGGUGCACACUUGCACAGAGUGCACAU-UUAGCGAGGUGCUAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ---------------..................((.(((((....))))).))(((((.((-(..((((((((........))))).))))))))))).....(((....))) ( -25.30) >DroYak_CAF1 143853 112 - 1 ACUAUUAUUAGUUAUAUUUCACUACUAUUUCUUUCUGUGCACACUUACACACAGUGCACAC-UUAGCGAGGUGCUAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ((((....)))).......................(((((((...........))))))).-...((((((((........))))))((((((.......)))))).....)) ( -23.70) >consensus ACUAUUAUUAGUUAUAUUCCA__ACCUUUUCUUUCUGUGCACACUUGCACACUGUGCACAUUUUAGCGAGGUGCGAGUUUCCGCCUCCGCAAUUGCACACAUUGCGUAUACGC ....................................(((((....(((((...))))).......((((((((........))))).)))...))))).....(((....))) (-21.82 = -22.06 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:43 2006