Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,886,663 – 2,886,801 |
Length | 138 |
Max. P | 0.956233 |
Location | 2,886,663 – 2,886,761 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -22.84 |
Consensus MFE | -22.70 |
Energy contribution | -22.74 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -0.99 |
Structure conservation index | 0.99 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2886663 98 - 23771897 CCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCACACAGAUACUCGCAGUCACCUGCGGCCGUGUGCUA------ ..((((.....))))..((((((((........((((....)))).............................((((....))))))))))))....------ ( -24.40) >DroSec_CAF1 131180 98 - 1 CCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCACACAGAUACUUGCAGUCACCUGCGGCCGUGUCCUA------ ..((((.....))))..((((((((........((((....)))).............................((((....))))))))))))....------ ( -23.50) >DroSim_CAF1 121787 98 - 1 CCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCACACAGAUACUCGCAGUCACCUGCGGCCGUGUGCUA------ ..((((.....))))..((((((((........((((....)))).............................((((....))))))))))))....------ ( -24.40) >DroEre_CAF1 138202 97 - 1 CCGCACCUUGAGUGCAAAUAUUGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCACACAGAUACUCGCAGUCACCUGCGGCCGUGU-----UGU-- ..((((.....)))).(((((.(((........((((....)))).............................((((....))))))).))))-----)..-- ( -19.50) >DroYak_CAF1 139100 104 - 1 CCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCACCAUGCAACUCACACAGAUACUCGUAGUCACCUGCGGCCGUGUGCUACUGUGU ..((((.....))))..((((((((........((((....)))).............................((((....)))))))))))).......... ( -22.40) >consensus CCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCACACAGAUACUCGCAGUCACCUGCGGCCGUGUGCUA______ ..((((.....))))..((((((((........((((....)))).............................((((....)))))))))))).......... (-22.70 = -22.74 + 0.04)
Location | 2,886,697 – 2,886,801 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -26.80 |
Energy contribution | -26.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.82 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2886697 104 + 23771897 GUGAGUUGCAUGGAGAAGUGACAUGAGUAUCUUGUAUCUGGCCAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAAGAGUAUACUGGAUGCUUCCU ....((..(........)..))...(((((((((((((((.((......((((.....))))(....)..))...)))))))))))...))))(((....))). ( -31.00) >DroSec_CAF1 131214 104 + 1 GUGAGUUGCAUGGAGAAGUGACAUGAGUAUCUUGUAUCUGGCCAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAGGAGGAUACUGGAUGCUUCCU ....((..(........)..))..((((((((.((((((..((.((((((((..(..((((...))))..)..))))))))..)).)))))).))))))))... ( -36.50) >DroSim_CAF1 121821 104 + 1 GUGAGUUGCAUGGAGAAGUGACAUGAGUAUCUUGUAUCUGGCCAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAAGAGGAAACUGGAUGCUUCCU ....((..(........)..))..((((((((((((((((.((......((((.....))))(....)..))...))))))))).((....)).)))))))... ( -31.80) >DroEre_CAF1 138235 94 + 1 GUGAGUUGCAUGGAGAAGUGACAUGAGUAUCUUGUAUCUGGCAAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAG----------GAUGCUUCCU ....((..(........)..))..((((((((((((((((.((......((((.....))))(....).....)))))))))))----------)))))))... ( -32.70) >DroYak_CAF1 139140 97 + 1 GUGAGUUGCAUGGUGAAGUGACAUGAGUAUCUUGUAUCUGGCCAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAGGAG-------GAUGCUUCCU ....((..(........)..))....((((((.((((((((((......((((.....)))))))....)))))))))))))(((((-------(...)))))) ( -30.90) >consensus GUGAGUUGCAUGGAGAAGUGACAUGAGUAUCUUGUAUCUGGCCAUAUUUGCACUCAAGGUGCGGCACCACGGAUGCAGAUACAGGAG_A_ACUGGAUGCUUCCU (..(((..((((.........)))).((((((.(((((((.......((((((.....)))))).....)))))))))))))...............)))..). (-26.80 = -26.80 + 0.00)
Location | 2,886,697 – 2,886,801 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -22.20 |
Energy contribution | -22.40 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.85 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2886697 104 - 23771897 AGGAAGCAUCCAGUAUACUCUUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCAC .((((((((..((((...(((((((((((...(((((.....((((.....))))...))))).))))))))))))))).)))...)))))............. ( -28.10) >DroSec_CAF1 131214 104 - 1 AGGAAGCAUCCAGUAUCCUCCUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCAC .((((((((..((((((....((((((((...(((((.....((((.....))))...))))).)))))))).)))))).)))...)))))............. ( -26.40) >DroSim_CAF1 121821 104 - 1 AGGAAGCAUCCAGUUUCCUCUUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCAC .((((((.....))))))(((((((((((...(((((.....((((.....))))...))))).)))))))))))....((((.........))))........ ( -30.90) >DroEre_CAF1 138235 94 - 1 AGGAAGCAUC----------CUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUUGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCAC .....((((.----------.(((((((((((.....)))).((((.....))))..........))))))).((((....))))........))))....... ( -21.40) >DroYak_CAF1 139140 97 - 1 AGGAAGCAUC-------CUCCUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCACCAUGCAACUCAC .....((((.-------....((((((((...(((((.....((((.....))))...))))).)))))))).((((....))))........))))....... ( -23.30) >consensus AGGAAGCAUCCAGU_U_CUCCUGUAUCUGCAUCCGUGGUGCCGCACCUUGAGUGCAAAUAUGGCCAGAUACAAGAUACUCAUGUCACUUCUCCAUGCAACUCAC .....((((............((((((((...(((((.....((((.....))))...))))).)))))))).((((....))))........))))....... (-22.20 = -22.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:40 2006