Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 346,508 – 346,617 |
Length | 109 |
Max. P | 0.600784 |
Location | 346,508 – 346,617 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -24.24 |
Energy contribution | -24.91 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.33 |
Mean z-score | -1.95 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 346508 109 + 23771897 UUUGCCAUCUGCUCUGCCCGGUCUGGGAUUCAAUAGCACCAUGCCGUCGGCAGCAGAGCCAGGACAAAGUGGCCUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG .(..((((((((((((((((((.(((............))).))))..)))...(.(((((((.(.....).)))))))--.)....)))))))))))..).......... ( -47.00) >DroSec_CAF1 553 109 + 1 UUUGCCAUCUGCUCUGCCCGGUUUGGGAUUCAAUAGCAACAUGCCGUCGGCAGCAGAACCCGGAGAAAGUGUACUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG .(..(((((((((((.(((.....)))........(((((.((((...)))).(((.((.(.......).)).))))))--))....)))))))))))..).......... ( -38.20) >DroSim_CAF1 1278 109 + 1 UUUGCCAUCUGCUCUGCCCGGAUUGGGAUUCAAUAGCAACAUGCCGUCGGCAGCAGAACCCGGACAAAGUGUACUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG .(..(((((((((((..((((((....))))....(((((.((((...)))).(((.((.(.......).)).))))))--)).)).)))))))))))..).......... ( -38.90) >DroEre_CAF1 1877 109 + 1 UCUGCCAUCUGCUCUGCCCGGCCUGGGAUUCAAUAGCAGCAUGCCGUCGGCAGCAGAUCCCGGGCAAAGUGUACUAGCU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG ...((((((((((((..((.((((((((((........((.((((...)))))).))))))))))..(((......)))--...)).))))))))))))............ ( -47.70) >DroYak_CAF1 1848 109 + 1 UCUGCCAUCUGCUCUCCCCGGCCUGGGAUUUAAUAGCAGCAUGCCGUCGGCAACAGACCCCGGACAAAGUGUACUAACU--GUGGGAGGAGCGGAUGGUGAUGUCUUUCAG ...(((((((((((..((((..(((((........((.....)).((((....).))))))))....(((......)))--.))))..)))))))))))............ ( -42.00) >DroPer_CAF1 2338 106 + 1 GCUGCCCUCCUCCCUGCCCGCCAUGGGCUUCAAUGGAGGCGUGGCCACAACACUAGC-----GAUGCAGAAUAAUGGUGGAGCAGGAGGAGCUGCCAGCGAUGUCUUCCAG (((((.(((((((.((((((((((..(((((....)))))(((.......)))....-----...........))))))).))))))))))..).))))............ ( -43.50) >consensus UCUGCCAUCUGCUCUGCCCGGCCUGGGAUUCAAUAGCAGCAUGCCGUCGGCAGCAGAACCCGGACAAAGUGUACUGGUU__GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG ...(((((((((((((((((((.((..............)).))))..)))......................(((......)))..))))))))))))............ (-24.24 = -24.91 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:17 2006