Locus 969

Sequence ID 3L_DroMel_CAF1
Location 2,885,785 – 2,885,888
Length 103
Max. P 0.634017
window1489

overview

Window 9

Location 2,885,785 – 2,885,888
Length 103
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 92.61
Mean single sequence MFE -29.40
Consensus MFE -27.62
Energy contribution -27.62
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.94
SVM decision value 0.21
SVM RNA-class probability 0.634017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2885785 103 - 23771897
----------GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGGCGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU
----------....(.((.(((((((((((((.(((....).)).)))))))).((....))...))))).)).)........(((((((((........)).)).))))).. ( -30.10)
>DroSec_CAF1 130248 103 - 1
----------GAAACUCAUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU
----------..............((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -27.60)
>DroSim_CAF1 120931 103 - 1
----------GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCAACACCAAGCGUGACCAUUAU
----------..............((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -26.90)
>DroEre_CAF1 137360 107 - 1
------CUCCGAAACUCCUCGGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAGCGACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU
------..((((......))))..((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -32.60)
>DroYak_CAF1 138174 113 - 1
CAGCUCCUCCGAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAGUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU
..((.((.(((....((((....(((((((((((.(....)))).).)))))))....)).))....))).)).)).......(((((((((........)).)).))))).. ( -29.80)
>consensus
__________GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU
........................((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. (-27.62 = -27.62 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:37 2006