Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,885,785 – 2,885,888 |
Length | 103 |
Max. P | 0.634017 |
Location | 2,885,785 – 2,885,888 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 92.61 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -27.62 |
Energy contribution | -27.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.12 |
Structure conservation index | 0.94 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2885785 103 - 23771897 ----------GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGGCGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU ----------....(.((.(((((((((((((.(((....).)).)))))))).((....))...))))).)).)........(((((((((........)).)).))))).. ( -30.10) >DroSec_CAF1 130248 103 - 1 ----------GAAACUCAUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU ----------..............((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -27.60) >DroSim_CAF1 120931 103 - 1 ----------GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCAACACCAAGCGUGACCAUUAU ----------..............((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -26.90) >DroEre_CAF1 137360 107 - 1 ------CUCCGAAACUCCUCGGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAGCGACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU ------..((((......))))..((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. ( -32.60) >DroYak_CAF1 138174 113 - 1 CAGCUCCUCCGAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAGUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU ..((.((.(((....((((....(((((((((((.(....)))).).)))))))....)).))....))).)).)).......(((((((((........)).)).))))).. ( -29.80) >consensus __________GAAACUCCUCCGUUUUUGCGCCGCAGGAGACGUGAGACGUAAAACAACAAUGAACAACGGCGGUGCAGAUAAAAGUGGCAGCGACACAAAGCGUGACCAUUAU ........................((((((((((.(....)......(((....((....))....)))))))))))))....(((((((((........)).)).))))).. (-27.62 = -27.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:37 2006